Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M02
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    31   0.012
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    31   0.012
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   7.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   9.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 333 NLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNL 494
           NL K       K     +   +  PGE+L ++G +G GK+T L  L      NL
Sbjct: 79  NLIKRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNL 132


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 333 NLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNL 494
           NL K       K     +   +  PGE+L ++G +G GK+T L  L      NL
Sbjct: 79  NLIKRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNL 132


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 2   PFDVSKSMDTRMQAVFRQCSLTFNRNVSTKRSRGNRQANSY 124
           P+D S +   ++ +   Q +  ++ N     S+GN   N Y
Sbjct: 67  PYDASVAAACKLYSSEGQQNSNYSSNSKPDCSKGNADQNGY 107


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +2

Query: 74  RNVSTKRSRGNRQANSYRYCEC 139
           RN+   R +G  +   + +C C
Sbjct: 559 RNLDLNRPQGGEELAQFNFCGC 580


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,392
Number of Sequences: 336
Number of extensions: 4663
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)