Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L23
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    33   0.22 
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    33   0.22 
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    33   0.22 
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +1

Query: 502 GAAREGVAADPRASGGRALWVPGRSRHH----RRRGTKTXSLQNRPEY--VDHARNTSTP 663
           G++RE  A +PR  GGRA+ V   +R H    +++G    +  N  +Y  +D + N S  
Sbjct: 568 GSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPADYDKIDPSDNVSIV 627

Query: 664 *TRPHELDESVAAILKKFNARR 729
                   + + AI KK N  +
Sbjct: 628 GLSSFAPGKPLTAIFKKTNGSK 649


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +1

Query: 502 GAAREGVAADPRASGGRALWVPGRSRHH----RRRGTKTXSLQNRPEY--VDHARNTSTP 663
           G++RE  A +PR  GGRA+ V   +R H    +++G    +  N  +Y  +D + N S  
Sbjct: 550 GSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPADYDKIDPSDNVSIV 609

Query: 664 *TRPHELDESVAAILKKFNARR 729
                   + + AI KK N  +
Sbjct: 610 GLSSFAPGKPLTAIFKKTNGSK 631


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +1

Query: 502 GAAREGVAADPRASGGRALWVPGRSRHH----RRRGTKTXSLQNRPEY--VDHARNTSTP 663
           G++RE  A +PR  GGRA+ V   +R H    +++G    +  N  +Y  +D + N S  
Sbjct: 662 GSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPADYDKIDPSDNVSIV 721

Query: 664 *TRPHELDESVAAILKKFNARR 729
                   + + AI KK N  +
Sbjct: 722 GLSSFAPGKPLTAIFKKTNGSK 743


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 436 RERTTSGQRSQRARHRGGLSAGGAAREG 519
           RER +S  RS RAR+ GG   GG    G
Sbjct: 35  RERESSRSRSPRARYGGGGGGGGGGGRG 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,533
Number of Sequences: 27780
Number of extensions: 272328
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)