Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L21
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       35   0.083
06_01_1181 + 10148653-10149405                                         33   0.34 
08_01_1010 - 10215625-10216335,10216372-10216473                       31   1.0  
07_03_0518 + 19007793-19008722                                         31   1.0  
07_03_0512 - 18954515-18955972                                         31   1.4  
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           30   1.8  
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405...    29   3.1  
07_03_0514 + 18984375-18985865                                         29   3.1  
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445...    29   4.1  
12_02_0168 + 14827529-14828050                                         29   5.5  
09_03_0006 + 11426346-11426420,11426733-11427452                       29   5.5  
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714     28   7.2  
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683...    28   9.6  
12_01_0249 + 1850443-1851030                                           28   9.6  
10_08_0739 + 20217842-20218852                                         28   9.6  
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    28   9.6  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    28   9.6  
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    28   9.6  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
 Frame = +3

Query: 216 GTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTT 395
           GT + + A       PT+       T  L     + P+T +   +  STAT +  S P T
Sbjct: 473 GTSELSTASTGELPSPTVKIPTTACTGELSTPTSQIPSTASTREL--STATGKIPSTPRT 530

Query: 396 ---TLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 530
              + A S I     T   +     IPSTP+    + +TG +PST CT
Sbjct: 531 NPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCT 578


>06_01_1181 + 10148653-10149405
          Length = 250

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 329 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 457
           +RY+ VH  +Y     P+  + YP ++    P  HV   VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197


>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 34/130 (26%), Positives = 46/130 (35%), Gaps = 2/130 (1%)
 Frame = +3

Query: 138 TPSKKARFGSPS-CVL*KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRG 314
           TPS     GSP          ++ PR+          P + R   +P  +T +   P R 
Sbjct: 55  TPSSPMVMGSPRRAASPDYTPSTPPRRAASPDYTPSTPTTPRRAASPD-YTPSTPTPPRR 113

Query: 315 LRYPATVTCLSIARSTATPRALSMPTTTL-ALSIITGQSTTCQDACDVELIPSTPTRHGR 491
              P         R+ +     S PT    A S     ST  + A   +  PSTPT   R
Sbjct: 114 AASPDYTPSTPPPRAASPDYTPSTPTPPRRAASPNYTPSTPQRHAASPDYTPSTPTPPRR 173

Query: 492 TISTGWLPST 521
             S  + PST
Sbjct: 174 AASLDYTPST 183


>07_03_0518 + 19007793-19008722
          Length = 309

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 466 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 338
           G NST  + WH V    WP+  E+      + R  GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243


>07_03_0512 - 18954515-18955972
          Length = 485

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 466 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 344
           G NST  + WH   +V WP+  E+      + R  GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 431 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSR--YGLYLKDRAYPITDLTAPLIDP 604
           +V R   R +D   A ++   HL+R   +DRLYPS+   G  L   AY     ++ L+  
Sbjct: 314 YVERSREREIDRLYAGRSL--HLERDGEMDRLYPSKGVLGADLAPSAY--AGSSSSLLAK 369

Query: 605 LKPKSL-KGIEYEPDN 649
            +P  L  G  YEP N
Sbjct: 370 ERPYRLHDGTSYEPTN 385


>07_03_0804 -
           21639016-21639231,21639379-21639555,21640120-21640588,
           21640608-21641218
          Length = 490

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 50  NYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQIWQSF-VRSLKGSEDI 202
           +YD  L  Y  D+D  ++  T+  DW + D  + +  W  F  R + G  D+
Sbjct: 90  HYDGILRRYAADVDIADLAITYHWDWPEVDG-DRASAWAGFAARRVTGRFDL 140


>07_03_0514 + 18984375-18985865
          Length = 496

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 466 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 338
           G NS   + WH V    WP+  E+      + R  GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426


>10_08_0377 +
           17343244-17343372,17344316-17344393,17344496-17344558,
           17344836-17344883,17345203-17345349,17346264-17346395,
           17346905-17346945,17347605-17347633,17348969-17349096,
           17349919-17349994,17350111-17350231,17350300-17350399,
           17350491-17350572,17350664-17350746,17351978-17352088,
           17352260-17352311,17352363-17352408,17352652-17352860,
           17353128-17353251,17353667-17353741,17353837-17353891,
           17354476-17354595,17354670-17354762,17354869-17355014,
           17355152-17355329,17356876-17357110,17357824-17357912
          Length = 929

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 26  HVHHTTLFNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQIWQSFVRSLKGSEDIR 205
           H    T    DR+L +++H +D   V ++  HD     +  E+QI+ S     K   D  
Sbjct: 19  HPDDATRTAADRWLQQFQHTLDAWQVADSLLHD---ESSNMETQIFCSQTLRSKVQRDFE 75

Query: 206 --AEERYRPTRRSVF 244
               E +RP + S++
Sbjct: 76  ELPSEAFRPLQDSLY 90


>12_02_0168 + 14827529-14828050
          Length = 173

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 530 GTAGRWQPACRDGPAMPCGRRR 465
           G AGRW+  CR G + P GRRR
Sbjct: 22  GGAGRWR--CRSGRSAPGGRRR 41


>09_03_0006 + 11426346-11426420,11426733-11427452
          Length = 264

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +3

Query: 261 PTLTPSRFTT-TLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 437
           P L P   T  T    L     PA + C + + +   P    M  T ++LS + G + T 
Sbjct: 161 PALRPMSLTRLTPFAALSTSTCPAAIACCAASTAVWNPNDRLM--TPMSLSAVFGIAATA 218

Query: 438 QDACDVELIPSTPT 479
           +      ++PS+PT
Sbjct: 219 EPRHAPRIVPSSPT 232


>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
          Length = 411

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 517 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 422
           D    V  V  C++ + G+  T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310


>12_02_0019 -
           12366259-12366819,12367653-12367685,12368294-12368363,
           12368582-12368712,12369627-12369673,12369803-12369879,
           12369963-12370027,12370105-12370191,12370300-12370389,
           12370972-12371037,12371608-12371664,12371749-12371850,
           12373018-12373554
          Length = 640

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 370 PAPYLCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQ---GMAGPSRQAGCHRPAVPISL 540
           P P   P   +  R  Q+++      ++W+ +L+ PQ   G   P+ +    R    + L
Sbjct: 59  PVPNAVPIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFSRLTSGLGL 118

Query: 541 RTLPKGP 561
           R  PKGP
Sbjct: 119 RLSPKGP 125


>12_01_0249 + 1850443-1851030
          Length = 195

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 132 NETPSKKARFGSPSCVL*KVRKTSEPRKGTGQHAAAFFPNSCRPT 266
           N+  SKK R G+ SC       +S     +   +AA  P S  PT
Sbjct: 21  NKVSSKKRRSGAKSCSFGSTTSSSSLAASSSDDSAATTPRSVLPT 65


>10_08_0739 + 20217842-20218852
          Length = 336

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/72 (27%), Positives = 26/72 (36%)
 Frame = +1

Query: 232 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSR 411
           P   S     LP     +  P+R          PLP  PS  L L+P+    P LP L+ 
Sbjct: 26  PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLAL 78

Query: 412 LLQANLPRAKTR 447
               + P    R
Sbjct: 79  KAVTSFPANSPR 90


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 131 KRDAVEESQIWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAE 310
           K++A++    ++S ++SL    D+    ++R      FP  LS++P +    D P+  A+
Sbjct: 510 KKNAIKFQNYFESTIQSLSKQHDL---SQFRLPPLPEFPSELSSHPVTTRPGDTPVDPAD 566

Query: 311 RI 316
            +
Sbjct: 567 NV 568


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 181 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 306
           SKR  +HQ+R      T +R F R PV LP  ++  +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 381 SMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGW 509
           S  T+TL+  + T   ++  D   + L P+T T  GR  +T W
Sbjct: 209 SPTTSTLSGRVTTTAWSSTSDVAFLPLPPTTSTLSGRVTTTAW 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,631,819
Number of Sequences: 37544
Number of extensions: 493001
Number of successful extensions: 1696
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)