Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L20
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 149 4e-37
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 34 0.025
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 30 0.31
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 2.9
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 27 3.8
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 5.0
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 26 6.6
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 26 6.6
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 149 bits (361), Expect = 4e-37
Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 1/193 (0%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSRGRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQVL 309
YIA+GT+ EDI RG +++IIDVVP+PG+P T+++ K + +E KG V + +V
Sbjct: 1119 YIAVGTSITKGEDIAVRGSTYLFEIIDVVPQPGRPETRHKLKLVTREEIKGTVAVVCEVD 1178
Query: 310 GYLISAVGQKIYIWQLKDND-LVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQP 486
GYL+S GQK+ + L+D D LVGV+FID Y ++NL+L DV ++++ + +
Sbjct: 1179 GYLLSGQGQKVIVRALEDEDHLVGVSFIDLGSYTLSAKCLRNLLLFGDVRQNVTFVGFAE 1238
Query: 487 AHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXRLIR 666
++L S+ + +F+V NL F+V++ GN L Y P+ ES+ G RL+
Sbjct: 1239 EPYRMTLFSKGQEALNVSAADFLVQGENLYFVVADTSGNLRLLAYDPENPESHSGERLVT 1298
Query: 667 KSDYHLGXQVHAM 705
+ D+H+G + AM
Sbjct: 1299 RGDFHIGNVITAM 1311
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/104 (19%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +1
Query: 313 YLISAVGQK-IYIWQLKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQPA 489
+++S K + +WQL++ + I+ + V+ + +NL++ S + +
Sbjct: 70 FILSGASDKTLRLWQLEEEYFTCIKTIELEATVNCLCVNENLVVCGCSNSSCIVYSWNAE 129
Query: 490 HRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMY 621
R L+ +SR F ++I +EF + + G +++ + + +Y
Sbjct: 130 QRNLTEISR-FTCSEIIPLEFAIVKLDHGIILTVCGSSKKIMVY 172
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 511 SRDFRTAQIYDMEFMVDNTNLGFLVSEAE-GNFALFM 618
SR+F +YD+EF+ DNT F S + G++ LF+
Sbjct: 621 SREF-LKNVYDIEFIYDNTRYRFTASRSSPGSYHLFL 656
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 516 PGDQRERPVRGLVAQQRDGLVDVGHQDEVLDGQHAV 409
P D+R + R V + R + VG +E++D HA+
Sbjct: 94 PQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 480 VAQQRDGLVDVGHQDEVLDGQHA 412
V RD + DVG QDE++D HA
Sbjct: 93 VQAARDFIQDVGIQDELIDAFHA 115
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 238 TKNRFKEIYSKEQKGPVTALTQVLGYLISA-VGQKIYIWQLK 360
T K+IYS + VT + Q YLIS+ + Q I +W L+
Sbjct: 294 TTGNVKDIYSGHYES-VTKILQWKSYLISSSLDQTIRVWDLE 334
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 222 LRDHVDYVVDYYPPPRSDILAVIIISSY 139
LRD +D +D Y P +L I + SY
Sbjct: 67 LRDWIDGTLDLYKPKLQKVLYPIFVHSY 94
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 406 VHRMLAVKNLILVADVYKSISLLRYQPAHRTLSLVSRDFR 525
+HRM V++ + +++K + + Y+P SL S+ F+
Sbjct: 1790 LHRMRTVEDRVRTCELFKEVFDIDYEPRTIGFSLSSQCFK 1829
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 128 PRRPDKAGRVGIRNNKAVIVENIKTVR 48
P RPDKA R+G + + ++ I+ R
Sbjct: 42 PSRPDKARRLGYKAKQGYVIYRIRVRR 68
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 128 PRRPDKAGRVGIRNNKAVIVENIKTVR 48
P RPDKA R+G + + ++ I+ R
Sbjct: 42 PSRPDKARRLGYKAKQGYVIYRIRVRR 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,679
Number of Sequences: 5004
Number of extensions: 49497
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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