Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L20
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 268 1e-71
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 268 1e-71
AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation specifi... 107 3e-23
U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding fa... 49 2e-05
AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum G... 49 2e-05
U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein. 49 2e-05
L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1 pr... 49 2e-05
BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA bin... 49 2e-05
BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA bin... 49 2e-05
BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA bin... 49 2e-05
AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA bin... 49 2e-05
D42085-1|BAA07680.2| 832|Homo sapiens KIAA0095 protein. 31 3.4
BC040229-1|AAH40229.1| 565|Homo sapiens ADAD1 protein protein. 31 4.5
BC034346-1|AAH34346.1| 819|Homo sapiens nucleoporin 93kDa protein. 31 5.9
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 268 bits (658), Expect = 1e-71
Identities = 118/205 (57%), Positives = 163/205 (79%)
Frame = +1
Query: 112 LSGLRGYIAIGTNYNYSEDITSRGRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVT 291
+SGL+GY+A GT E++T RGRI+I D+I+VVPEPGQPLTKN+FK +Y KEQKGPVT
Sbjct: 1114 VSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVT 1173
Query: 292 ALTQVLGYLISAVGQKIYIWQLKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISL 471
AL G+L+SA+GQKI++W L+ ++L G+AFIDTQ+Y+H+M++VKN IL ADV KSISL
Sbjct: 1174 ALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISL 1233
Query: 472 LRYQPAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGG 651
LRYQ +TLSLVSRD + ++Y ++FMVDN LGFLVS+ + N ++MY P+A+ES+GG
Sbjct: 1234 LRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGG 1293
Query: 652 XRLIRKSDYHLGXQVHAMFRINVRS 726
RL+R++D+H+G V+ +R R+
Sbjct: 1294 MRLLRRADFHVGAHVNTFWRTPCRA 1318
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenylation
specific factor 1, 160kDa protein.
Length = 1443
Score = 268 bits (657), Expect = 1e-71
Identities = 118/204 (57%), Positives = 162/204 (79%)
Frame = +1
Query: 112 LSGLRGYIAIGTNYNYSEDITSRGRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVT 291
+SGL+GY+A GT E++T RGRI+I D+I+VVPEPGQPLTKN+FK +Y KEQKGPVT
Sbjct: 1114 VSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVT 1173
Query: 292 ALTQVLGYLISAVGQKIYIWQLKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISL 471
AL G+L+SA+GQKI++W L+ ++L G+AFIDTQ+Y+H+M++VKN IL ADV KSISL
Sbjct: 1174 ALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISL 1233
Query: 472 LRYQPAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGG 651
LRYQ +TLSLVSRD + ++Y ++FMVDN LGFLVS+ + N ++MY P+A+ES+GG
Sbjct: 1234 LRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGG 1293
Query: 652 XRLIRKSDYHLGXQVHAMFRINVR 723
RL+R++D+H+G V+ +R R
Sbjct: 1294 MRLLRRADFHVGAHVNTFWRTPCR 1317
>AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation
specificity factor protein.
Length = 216
Score = 107 bits (258), Expect = 3e-23
Identities = 47/89 (52%), Positives = 67/89 (75%)
Frame = +1
Query: 457 KSISLLRYQPAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQAR 636
KSISLLRYQ +TLSLVSRD + ++Y ++FMVDN LGFLVS+ + N ++MY P+A+
Sbjct: 2 KSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAK 61
Query: 637 ESYGGXRLIRKSDYHLGXQVHAMFRINVR 723
ES+GG RL+R++D+H+G V+ +R R
Sbjct: 62 ESFGGMRLLRRADFHVGAHVNTFWRTPCR 90
>U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding factor
protein.
Length = 1140
Score = 49.2 bits (112), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + D+ I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum Group
E Complementing protein protein.
Length = 1140
Score = 49.2 bits (112), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGDVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + D+ I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein.
Length = 1140
Score = 48.8 bits (111), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + +L I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1
protein.
Length = 1140
Score = 48.8 bits (111), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + +L I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 48.8 bits (111), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + +L I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 48.8 bits (111), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + +L I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 48.8 bits (111), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + +L I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 48.8 bits (111), Expect = 2e-05
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1
Query: 130 YIAIGTNYNYSEDITSR-GRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQV 306
Y +GT Y E+ + GRI+++ D + + + KE KG V ++ +
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 307 LGYLISAVGQKIYIWQ-LKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQ 483
G L++++ + +++ + +L I + + ILV D+ +S+ LL Y+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 936
Query: 484 PAHRTLSLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGXR-- 657
P ++RDF + +E + D+ LG AE F LF+ Q + + R
Sbjct: 937 PMEGNFEEIARDFNPNWMSAVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQH 991
Query: 658 LIRKSDYHLGXQVH 699
L +HLG V+
Sbjct: 992 LQEVGLFHLGEFVN 1005
>D42085-1|BAA07680.2| 832|Homo sapiens KIAA0095 protein.
Length = 832
Score = 31.5 bits (68), Expect = 3.4
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 219 GARAAADQEPLQGDLLQGAEGSGDRAHAGARLPHIRRRTEDIHMAAE--GQRPSGRRVHR 392
G+ + D E G+LLQ AE + LPH+ R ++I A E R R
Sbjct: 9 GSASPMDTEGF-GELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQE 67
Query: 393 HADIRA 410
AD++A
Sbjct: 68 TADVKA 73
>BC040229-1|AAH40229.1| 565|Homo sapiens ADAD1 protein protein.
Length = 565
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 115 SGLRGYIAIGTN-YNYSEDITSRGRIIIYDIIDVVPEPGQPLTKN 246
+G +AIGT YNYS+DI GR +++D VV L+KN
Sbjct: 242 AGQHEVVAIGTGEYNYSQDIKPDGR-VLHDTHAVVTARRSLLSKN 285
>BC034346-1|AAH34346.1| 819|Homo sapiens nucleoporin 93kDa protein.
Length = 819
Score = 30.7 bits (66), Expect = 5.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 255 GDLLQGAEGSGDRAHAGARLPHIRRRTEDIHMAAE--GQRPSGRRVHRHADIRA 410
G+LLQ AE + LPH+ R ++I A E R R AD++A
Sbjct: 7 GELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKA 60
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,004,410
Number of Sequences: 237096
Number of extensions: 1998865
Number of successful extensions: 5794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5794
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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