Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L17
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 102 3e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 58 7e-09
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 46 3e-05
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 46 3e-05
U43282-1|AAA83613.2| 547|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 28 6.7
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 28 6.7
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 28 8.8
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 28 8.8
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 102 bits (245), Expect = 3e-22
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Frame = +1
Query: 115 AQADVSIKAEPQSHDEKVEHCSI---IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKI 285
++A+ A DE C + IA+P+A +S +R G+K
Sbjct: 16 SEANGDATAPTTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKD 75
Query: 286 VQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIM 465
VQK+LR EKG+ AG++SPI++ H+P +CEEK++ Y Y PSR+ +G A+G R I+
Sbjct: 76 VQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSIL 135
Query: 466 VLVKEHEDYKDLYEEVKSEIKLL 534
+ VK D+K+LY+EV ++ L
Sbjct: 136 IFVKPSGDFKELYDEVAEALRHL 158
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +1
Query: 250 NHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDI 429
N+K ++ G K L G ++ A D P+EI+ HLP +CE+K+V Y + S+ +
Sbjct: 31 NYKQ-LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAAL 89
Query: 430 GAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 534
G A G R I + ++E K +++K +++ L
Sbjct: 90 GRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +1
Query: 259 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 438
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Query: 439 MGTMRGCIMVLVKEHEDYK 495
+ + LV + + K
Sbjct: 195 VRRKTTAAVALVDVNPEDK 213
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +1
Query: 259 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 438
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Query: 439 MGTMRGCIMVLVKEHEDYK 495
+ + LV + + K
Sbjct: 175 VRRKTTAAVALVDVNPEDK 193
>U43282-1|AAA83613.2| 547|Caenorhabditis elegans Hypothetical
protein T22E5.3 protein.
Length = 547
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 16 SACVLHVLTILTXSYXSKSEIMGQVKQAPVEQXAQADVSIK-AEPQSHDEKVEHCSI 183
S VLHV++I S + ++ +++ + VSIK EP + V+H +I
Sbjct: 114 SCFVLHVVSIFPCLTSSYESSPSEARELTIDEKTENSVSIKWKEPTESPDLVDHYTI 170
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 231 FIYLFGEFFCGHRFRYYTTMFDFFIV 154
F ++FGEFF H+ R + + F +V
Sbjct: 37 FFWIFGEFFLEHKARVFWRLVQFVLV 62
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 284 SFRSSYVWVKRAWFSLLETFHP 349
+FR VW +WFS +TF P
Sbjct: 244 TFRRCEVWFNSSWFSTAQTFDP 265
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 577 LKLNSKTFKLINS-YILVIKSALNFLYITI*LFHS 678
LK+ S L++ YIL+I S+LNF Y+T +F++
Sbjct: 336 LKVRSVVQYLVSKHYILMILSSLNFQYVTPIVFYN 370
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 394 RPSPRKRQVSDT*FLWVKCLQQRKPCPFHPDVTAS 290
R S +R+VS F++++ L + CP HP + S
Sbjct: 48 RISTTRRRVSSAVFVYLQMLFRPSVCPLHPSIHLS 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,142
Number of Sequences: 27780
Number of extensions: 334901
Number of successful extensions: 885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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