Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L16
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    62   5e-11
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.58 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   7.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
 Frame = +1

Query: 211 DVDAICTCKILQGLFKSDNISYTLVPVGGISELKTA---YXXXXXXXXXXXXXXCGGTID 381
           D DA+C CK+L  L K D IS+ + PV G  +L+ A                  CG  +D
Sbjct: 33  DPDALCACKLLSTLLKGDFISHKIRPVSGYRDLEQANKTLLEQNEDIKFIILLNCGTMVD 92

Query: 382 LVDILQPEEDVVFFVLDSHKPTDVCNVYSDGQV 480
           L + L   EDV  +V+DSH+P ++ N+Y +  +
Sbjct: 93  LNNYLVSMEDVSIYVIDSHRPHNLNNIYIENNI 125


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = -2

Query: 506 SSSSRYTSVTCPSL*TLQTSVGLWESSTKNTTSSSGCKISTRSIVP 369
           SS+S Y+ +T     TLQT+    +++++NT S+SG  ++T +  P
Sbjct: 265 SSASAYSYIT-----TLQTATTAQQTTSENTYSTSGPNLTTSNTSP 305


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 393 DIDQVYSTSAVHQHYVLD 340
           D+DQV S + +H H++++
Sbjct: 278 DVDQVDSLTGIHDHHIIN 295


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 506 SSSSRYTSVTCPSL*TLQT-SVGLWESSTKNTTSSSGCKISTRS 378
           SSS   +S+T  SL +  T S  L  SST +TTS++    +T S
Sbjct: 136 SSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSS 179



 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 506 SSSSRYTSVTCPSL*TLQTSVGLWESSTKNTTSSSGCKISTRS 378
           +SSS  TS +  S  +L +S  L  SST +TTS+S    S  S
Sbjct: 70  ASSSSLTSSSAASS-SLTSSSSLASSSTNSTTSASPTSSSLTS 111


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 527 SSKLGMFSSSSRYTSVTCPSL*TLQTSVGLWESSTKNTTSSSGCKISTRS 378
           SS      SSS  T+ T PS  +  +S     SS+ +++SSS    S+ S
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186



 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 527 SSKLGMFSSSSRYTSVTCPSL*TLQTSVGLWESSTKNTTSSSGCKISTRSIVP 369
           SS     SSSS  +S +  S  +  +S     SS+ +++SSS    S+ S VP
Sbjct: 157 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVP 209


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -2

Query: 530 ISSKLGMFSSSSRYTSVTCPSL*TLQTSVGLWESSTKNTTSSSGCKISTRS 378
           +S      SSS   TS T  SL +  +S     SST ++T SS    ST S
Sbjct: 157 VSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207



 Score = 24.6 bits (51), Expect = 9.4
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = -2

Query: 527 SSKLGMFSSSSRYTSVTCPSL*TLQTSVGLWESSTKNTTSSSGCKISTRSIVPPQXXXXX 348
           SS   + SSS   +S+   S  +  TS  L  SS+ +T SSS    S+ SI+        
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSS---SSSSIISSSSSSSS 281

Query: 347 XXXXXXXXX*AVFNSEIPPTGTS 279
                     +  +S   PT TS
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTS 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,211
Number of Sequences: 5004
Number of extensions: 37551
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)