Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L16
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical pr...    60   1e-09
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    32   0.30 
U00047-3|AAA50689.2|  225|Caenorhabditis elegans Hypothetical pr...    28   3.7  

>Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical
           protein F34D10.2 protein.
          Length = 574

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
 Frame = +1

Query: 136 MFIED-LRNDFYXXXXXXXXXXXX--HYDVDAICTCKILQGLFKSDNISYTLVPVGGISE 306
           M IED  R +FY                D DA+CT  IL  L + D+I ++++ V G S 
Sbjct: 1   MIIEDNFRQEFYNKIKKGDKSVVLIVSVDTDALCTTMILTHLLRCDDIPFSILAVEGWSS 60

Query: 307 LKTAYXXXXXXXXXXXXXXCGGTIDLVDILQPEEDVVFFVLDSHKPTDVCNVYSDGQVTL 486
           ++  +              CG T  L  +  P   +  FV+DSH+P  + NVY +GQ+ L
Sbjct: 61  VEKIFADSQEQKCHYILINCGATRSLTRLQIPPASIA-FVIDSHRPFHIENVYENGQIHL 119

Query: 487 V 489
           +
Sbjct: 120 L 120


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 381 VYSTSAVHQHYVLDFFIVFFVSSLQF 304
           ++   A H+HY +D FI F++SS  F
Sbjct: 364 IFLILAAHEHYSIDVFIAFYISSRMF 389


>U00047-3|AAA50689.2|  225|Caenorhabditis elegans Hypothetical
           protein ZK418.5 protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 20  DRSRRCSMVVQCXXLSLKISNTQRKMVIS*VIRSCVRQKCL*RTSEMTFTIY 175
           D S    ++V    L+  I+ T  K ++S ++  CV    + +T + TF++Y
Sbjct: 139 DSSADLLVIVSLACLTWMITRTPNKFLVSPILAMCVFSTFVYQTVQHTFSLY 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,422
Number of Sequences: 27780
Number of extensions: 216893
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)