Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L11
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    29   0.57 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   3.1  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   5.4  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 338 IYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLVYWEDKTLFIEQKFITLNDGFVR 517
           +YT  + V GH L  +S IRY   I I   +    K V +   T F  + F  LN     
Sbjct: 158 LYTEKRMVRGHGLTISSQIRYVYYIEILKQFPNYLKAVEFNTGTTFF-KSFKCLNIKKNS 216

Query: 518 AIVLSRQNL---LNVDAAALFK 574
           +++LS        N++  AL+K
Sbjct: 217 SLILSLHAFSKGRNINPVALWK 238


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 239 TTQDVDIFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDG---HALQGASSIRY 400
           TT+++++ LR       ++ L      F   T I   +KAV+G   H L   S IRY
Sbjct: 512 TTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGLPIHPLFKKSKIRY 568


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 679 ILIFFPELGARYLNRLKPMLNF 614
           +L+F P+L A+YLN L   L F
Sbjct: 352 LLLFIPKLEAKYLNNLSKSLMF 373


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 528 CHDKTSLMWTQLHYSRVFQELIRNLNVQKKLSIGFNLLRYR 650
           C +   L  ++ + +++F  ++RNLNV  +L     +L +R
Sbjct: 186 CKNSKLLSGSRDYGTQLFASILRNLNVPTRLVFSLQVLSFR 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,750
Number of Sequences: 5004
Number of extensions: 74836
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)