Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L11
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019104-1|AAH19104.1|  208|Homo sapiens C8orf55 protein protein.     116   1e-25
BC001311-1|AAH01311.1|  208|Homo sapiens chromosome 8 open readi...   116   1e-25
AF242773-1|AAF65450.1|  208|Homo sapiens mesenchymal stem cell p...   116   1e-25
AK075407-1|BAC11600.1|  208|Homo sapiens protein ( Homo sapiens ...   113   9e-25

>BC019104-1|AAH19104.1|  208|Homo sapiens C8orf55 protein protein.
          Length = 208

 Score =  116 bits (278), Expect = 1e-25
 Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
 Frame = +2

Query: 89  MYCIVVTIVALA---YIFWDVNYFLRIAFTIGIGRLFQKKC-GINDSTTIYGFCTTQDVD 256
           M  ++V ++AL    +   DV Y +R+   +   RL Q +   +       G     D+D
Sbjct: 1   MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD 60

Query: 257 IFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKV 436
           + L HMNNARY+RE DFAR     R G+   ++ +  H +  AS  R+RR++ +  P++V
Sbjct: 61  LLL-HMNNARYLREADFARVAHLTRCGVLGALRQLRAHTVLAASCARHRRSLRLLEPFEV 119

Query: 437 ETKLVYWEDKTLFIEQKFITLNDGFVRAIVLSRQNLLNVDAAALFKGI-PGADQKPECPE 613
            T+L+ W+D+  ++E +F++L DGFV A++  RQ+LL      + + +     + PE P 
Sbjct: 120 RTRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPA 179

Query: 614 EIKHWLQSIEVSSAKLR 664
           +++HW+   E SS  LR
Sbjct: 180 DLQHWISYNEASSQLLR 196


>BC001311-1|AAH01311.1|  208|Homo sapiens chromosome 8 open reading
           frame 55 protein.
          Length = 208

 Score =  116 bits (278), Expect = 1e-25
 Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
 Frame = +2

Query: 89  MYCIVVTIVALA---YIFWDVNYFLRIAFTIGIGRLFQKKC-GINDSTTIYGFCTTQDVD 256
           M  ++V ++AL    +   DV Y +R+   +   RL Q +   +       G     D+D
Sbjct: 1   MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD 60

Query: 257 IFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKV 436
           + L HMNNARY+RE DFAR     R G+   ++ +  H +  AS  R+RR++ +  P++V
Sbjct: 61  LLL-HMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEV 119

Query: 437 ETKLVYWEDKTLFIEQKFITLNDGFVRAIVLSRQNLLNVDAAALFKGI-PGADQKPECPE 613
            T+L+ W+D+  ++E +F++L DGFV A++  RQ+LL      + + +     + PE P 
Sbjct: 120 RTRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPA 179

Query: 614 EIKHWLQSIEVSSAKLR 664
           +++HW+   E SS  LR
Sbjct: 180 DLQHWISYNEASSQLLR 196


>AF242773-1|AAF65450.1|  208|Homo sapiens mesenchymal stem cell
           protein DSCD75 protein.
          Length = 208

 Score =  116 bits (278), Expect = 1e-25
 Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
 Frame = +2

Query: 89  MYCIVVTIVALA---YIFWDVNYFLRIAFTIGIGRLFQKKC-GINDSTTIYGFCTTQDVD 256
           M  ++V ++AL    +   DV Y +R+   +   RL Q +   +       G     D+D
Sbjct: 1   MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD 60

Query: 257 IFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKV 436
           + L HMNNARY+RE DFAR     R G+   ++ +  H +  AS  R+RR++ +  P++V
Sbjct: 61  LLL-HMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEV 119

Query: 437 ETKLVYWEDKTLFIEQKFITLNDGFVRAIVLSRQNLLNVDAAALFKGI-PGADQKPECPE 613
            T+L+ W+D+  ++E +F++L DGFV A++  RQ+LL      + + +     + PE P 
Sbjct: 120 RTRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPA 179

Query: 614 EIKHWLQSIEVSSAKLR 664
           +++HW+   E SS  LR
Sbjct: 180 DLQHWISYNEASSQLLR 196


>AK075407-1|BAC11600.1|  208|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0098 fis, clone NT2RP2002695, highly similar to
           Mesenchymal stem cell protein DSCD75. ).
          Length = 208

 Score =  113 bits (271), Expect = 9e-25
 Identities = 63/197 (31%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
 Frame = +2

Query: 89  MYCIVVTIVALA---YIFWDVNYFLRIAFTIGIGRLFQKKC-GINDSTTIYGFCTTQDVD 256
           M  ++V ++AL    +    V Y +R+   +   RL Q +   +       G     D+D
Sbjct: 1   MLGLLVALLALGLAVFALLGVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD 60

Query: 257 IFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKV 436
           + L HMNNARY+RE DFAR     R G+   ++ +  H +  AS  R+RR++ +  P++V
Sbjct: 61  LLL-HMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEV 119

Query: 437 ETKLVYWEDKTLFIEQKFITLNDGFVRAIVLSRQNLLNVDAAALFKGI-PGADQKPECPE 613
            T+L+ W+D+  ++E +F++L DGFV A++  RQ+LL      + + +     + PE P 
Sbjct: 120 RTRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPA 179

Query: 614 EIKHWLQSIEVSSAKLR 664
           +++HW+   E SS  LR
Sbjct: 180 DLQHWISYNEASSQLLR 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,669,167
Number of Sequences: 237096
Number of extensions: 2478390
Number of successful extensions: 4111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4111
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)