Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L10
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413... 29 3.5
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 4.6
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969... 29 6.1
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 8.1
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 8.1
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 8.1
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 28 8.1
>02_01_0562 +
4129852-4130235,4130355-4130453,4131046-4131146,
4131229-4131300,4131712-4131802,4132005-4132085,
4132263-4132331,4132634-4132690,4132776-4132898,
4133000-4133038,4133255-4133380
Length = 413
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 527 FANIPRHNYVYLASILYISPF*LFCKTNFSFHISHRLPFELQKR 658
FA RH + LA LY + F L+CK + R+P + KR
Sbjct: 251 FAVTRRHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKR 294
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 81 SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 260
S+K V +K K+ +N + L + + T +L+K+ DEY + ++S
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495
Query: 261 KTTEMKFKPGEEFEED 308
+ TE K ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511
>11_03_0084 +
9696368-9696554,9696648-9696718,9696821-9696901,
9697139-9697206,9697335-9697437,9700422-9700567,
9700686-9700803,9701693-9701797,9702333-9702434,
9702518-9702655,9703475-9703603,9703682-9703762,
9703883-9703957,9704861-9705028,9705125-9705242,
9705345-9705409,9705547-9705637,9705801-9705885,
9706006-9706084,9706317-9706414,9707029-9707137,
9707224-9707292,9707770-9707835,9707952-9708041,
9708416-9708526
Length = 850
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 417 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTS 539
G + ++ M AKD T +V +V KD S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 770 WLNINNKRIFEYNKRFAHKRPAVVTVVAK 684
W+N +KRI E NK+ K+ A+ T K
Sbjct: 239 WMNEKSKRISEQNKKNCQKKKAIHTAGTK 267
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 770 WLNINNKRIFEYNKRFAHKRPAVVTVVAK 684
W+N +KRI E NK+ K+ A+ T K
Sbjct: 239 WMNEKSKRISEQNKKNCQKKKAIHTAGTK 267
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 463 APESTRSSKRTLLRGRESVPPIREHPAAQLCLFSIYSIH 579
AP +TR + + +E+ P RE PA + C S+H
Sbjct: 77 APRATRKGRPASDKKKEAGTPARERPAGKWCSVHNTSLH 115
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 770 WLNINNKRIFEYNKRFAHKRPAVVTVVAK 684
W+N +KRI E NK+ K+ A+ T K
Sbjct: 236 WMNEKSKRISEQNKKNCQKKKAIHTAGTK 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,471,982
Number of Sequences: 37544
Number of extensions: 439491
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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