Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L08
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.85 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.6  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   6.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 616 YTRLVKISPSSLRYLEEVTEYNSGIYQSLLSKAFHKKD 729
           Y  + K  P++ +  + VT    G+Y     K +H++D
Sbjct: 432 YKIIAKPHPNTYQIADPVTNEIKGVYNMTNLKFYHRRD 469


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 459 FC-GEISCEDNIKNDSARTEDDPN 527
           FC G+  C+D    +S   E DPN
Sbjct: 127 FCNGKPDCKDESDENSCTVETDPN 150


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 459 FC-GEISCEDNIKNDSARTEDDPN 527
           FC G+  C+D    +S   E DPN
Sbjct: 134 FCNGKPDCKDESDENSCTVETDPN 157


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 PPE*GPKATTGITIRLA 177
           PP+ G K T G+TI L+
Sbjct: 236 PPDSGEKLTLGVTILLS 252


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 PPE*GPKATTGITIRLA 177
           PP+ G K T G+TI L+
Sbjct: 236 PPDSGEKLTLGVTILLS 252


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 PPE*GPKATTGITIRLA 177
           PP+ G K T G+TI L+
Sbjct: 236 PPDSGEKLTLGVTILLS 252


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 PPE*GPKATTGITIRLA 177
           PP+ G K T G+TI L+
Sbjct: 236 PPDSGEKLTLGVTILLS 252


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 PPE*GPKATTGITIRLA 177
           PP+ G K T G+TI L+
Sbjct: 236 PPDSGEKLTLGVTILLS 252


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 459 FC-GEISCEDNIKNDSARTEDDPN 527
           FC GE  C D    ++   ++DPN
Sbjct: 135 FCNGEKDCSDGSDENTCDIDNDPN 158


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 730 YPFCETLYLTMIDKCHCYIQ*LLPN 656
           Y FC+ L  +  ++C   I   LPN
Sbjct: 206 YQFCDNLQYSFDNQCSGTIDWALPN 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,951
Number of Sequences: 336
Number of extensions: 3830
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)