Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L08
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427...   126   2e-29
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351...    83   3e-16
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634...    34   0.10 
12_01_0878 - 8420348-8420580,8420728-8420890                           31   0.74 
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907...    31   1.3  
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365...    30   2.3  
07_03_1754 - 29226516-29226974,29227012-29228430                       30   2.3  
11_01_0128 - 1043053-1043151,1043238-1043570,1043588-1043707,104...    29   3.9  
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    29   3.9  
02_01_0090 - 637141-640263                                             28   6.9  
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461...    28   6.9  
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926...    28   6.9  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    28   9.1  
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229...    28   9.1  
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937...    28   9.1  

>12_02_0178 -
           14941342-14941391,14941909-14942002,14942498-14942716,
           14943409-14943492,14943783-14944067,14944349-14944501,
           14944618-14944740,14945429-14945495,14946122-14946309,
           14947134-14947250,14947720-14947812,14948377-14948459,
           14948565-14948610
          Length = 533

 Score =  126 bits (303), Expect = 2e-29
 Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 28/219 (12%)
 Frame = +3

Query: 15  VAEIQAVVVPCGITASSSADERQALMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 194
           VA +Q +V+P       +     A+++ CK  V  L  AG+RA+ D R+NYSPGWK++HW
Sbjct: 310 VAPLQVIVIPVPYKDVDTT----AIVNECKKTVETLEKAGIRADLDTRENYSPGWKYSHW 365

Query: 195 ELKGVPVRVELGPKDIA--KGTVVAVQ-------RLTGDK---------MVFKRDSVAK- 317
           E+KGVP+R+E+GPKD+A  +GT V +            +K          V +RD+ AK 
Sbjct: 366 EMKGVPLRIEIGPKDMANNQGTFVIMHFPENCYIFTVREKELVVVVVMARVVRRDNGAKA 425

Query: 318 -----DIVE----LLDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNILLAPFCGE 470
                D+VE    LLD+    +FE A + RDA L  V  W++F  AL +K ++LAP+C E
Sbjct: 426 DIPTADLVEKVNGLLDEVQKNLFETAKQKRDACLKVVNTWDEFIVALNDKKLILAPWCDE 485

Query: 471 ISCEDNIKNDSARTEDDPNVDVKAPAMGAKSLCIPFEPP 587
              E ++K   ART+ D           AK+LC PFE P
Sbjct: 486 EEVEKDVK---ARTKGDLG--------AAKTLCTPFEQP 513


>07_01_0465 +
           3513296-3513631,3514386-3514442,3515196-3515306,
           3515466-3515552,3515627-3515740,3515850-3516056,
           3516291-3516428,3516691-3516852,3516939-3517138,
           3517429-3517554,3517644-3517785
          Length = 559

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 9/228 (3%)
 Frame = +3

Query: 15  VAEIQAVVVPCGITASSSADERQALMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 194
           +A IQ V+VP         DE+ A+M++  ++ N L  AG+R + D  +  +PGWKFN +
Sbjct: 346 IAPIQVVIVPIW----KKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFY 401

Query: 195 ELKGVPVRVELGPKDIAKGTVVAVQRLTGDKM-----VFKRDSVAKDIVE-LLDKTHAQM 356
           E+KGVP+R+E+GP+D+   +VV  +R    K      V    S+  D ++  L +  A +
Sbjct: 402 EMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASL 461

Query: 357 FERATKDRDARLSSVTKWEDFTAALEEKNILLAPFCGEIS---CEDNIKNDSARTEDDPN 527
            ++A   RD + SS      FT +    NI+     GE+     E           D   
Sbjct: 462 LQKAIAFRDRQTSSELNGALFTFS----NIVDVSSYGELKEAIAEGKWARGPWSASDADE 517

Query: 528 VDVKAPAMGAKSLCIPFEPPRQLSESDRCIHPACKNKPKFITLFGRSY 671
           + VK     A   C PFE P     + +C      N  + + +F +SY
Sbjct: 518 LKVKEET-SATIRCFPFEQP---EGAKKCFMTG--NPAEEVAIFAKSY 559


>05_05_0303 -
           23958989-23960563,23962628-23962864,23963250-23963449,
           23964088-23964250,23964348-23964554,23964667-23964798
          Length = 837

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +3

Query: 333 LDKTHAQMFERATKDRDAR-LSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSAR 509
           +D+  A  F+R   D+ A  LS+VT+ +  ++  ++++I            +NIKNDS+R
Sbjct: 766 IDEPSASDFQRQFSDKSASTLSTVTESDIISSVADQEDI-----------SNNIKNDSSR 814

Query: 510 TEDDPNVDVKAPAMGAKSLCI 572
             + P +    P MG+  +C+
Sbjct: 815 EYESPELPT-IPTMGSDIICV 834


>12_01_0878 - 8420348-8420580,8420728-8420890
          Length = 131

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 162 NYSPGWKFNHWELKGVPVRVELGPKDIAKGTVVAV-QRLTGDKMVFKRDSVAK 317
           +++ G ++  W+L+G  V +E+  +D+ + T+ +V   +   +M +K   VAK
Sbjct: 56  SWTTGLEWRQWQLRGAAVMLEVEEEDLERLTMTSVDDEVVAMRMAWKTTKVAK 108


>05_07_0340 +
           29389314-29389627,29389966-29390112,29390654-29390789,
           29391098-29391199,29391801-29391920,29392033-29392113,
           29392578-29392918,29393069-29393314,29394195-29394519,
           29395123-29395356,29395437-29395691
          Length = 766

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 215 YWNPLQLPVVKLPARRIVIPVVAF 144
           YWN L +P V L  RR+++ V  F
Sbjct: 356 YWNNLSIPFVSLTVRRLIVAVAFF 379


>09_06_0346 +
           22435164-22435491,22435990-22436114,22436402-22436514,
           22436919-22437023,22437147-22437531,22437645-22437776,
           22437980-22438450,22438550-22439278,22439579-22439767
          Length = 858

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 261 AVQRLTGDKMVFKRDSVAKDIVELLDKTH 347
           A  ++  +K+V +++SVA  IVEL+D+ H
Sbjct: 148 AFPKVQAEKLVIEKNSVANGIVELIDQHH 176


>07_03_1754 - 29226516-29226974,29227012-29228430
          Length = 625

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 367 ALSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNSTLTGTPFNSQW 188
           A SN C  V S    M+  +   L T L P+RRC  ++ P    L P+ T+  + F   +
Sbjct: 69  ASSNHCFFV-SPLDDMTIISLPPLDTPLEPLRRCAISSSP----LSPDCTIVFSTFMDTY 123

Query: 187 LNF-QPGE 167
           L + +PGE
Sbjct: 124 LAYTRPGE 131


>11_01_0128 -
           1043053-1043151,1043238-1043570,1043588-1043707,
           1043810-1043993,1044088-1044275,1044714-1044808,
           1044884-1045003,1045232-1045350,1052717-1052799,
           1052892-1053071
          Length = 506

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +1

Query: 541 HQPWVRNHCAYHLNLQDNCLNLTAAYTRLVKISPSSLRYLEEVTEYNSGIYQSLLSKAFH 720
           +Q  VRN C   L   D C      Y  L +   S L  + E  EYN    Q L +  FH
Sbjct: 433 NQKLVRNKCPVMLKPND-CAFFVMRYMELYEGDDSPLIQVAESEEYNDLRSQMLYNMVFH 491

Query: 721 KKD 729
             +
Sbjct: 492 SNN 494


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 99  CKALVNDLLAAGVRAEGDYRDNYSPGWKFNHWELKGVPVRVELGPKDIAKGTVVAVQRLT 278
           C  + ++L + G+RAE  + +         + E K VP+   +GPK++   T+    R +
Sbjct: 625 CNEVASELKSKGIRAEVCHGERLPK--LIRNAETKKVPLMAVVGPKEVQARTLTIRSRHS 682

Query: 279 GD 284
           G+
Sbjct: 683 GE 684


>02_01_0090 - 637141-640263
          Length = 1040

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/84 (25%), Positives = 39/84 (46%)
 Frame = +3

Query: 24  IQAVVVPCGITASSSADERQALMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHWELK 203
           + ++++P GI A+++ DER AL+      V+ + A     +G     +   W        
Sbjct: 13  VLSLILPSGIGAAAAGDERSALLALKAGFVDTVSALADWTDGGKASPHCK-WTGVGCNAA 71

Query: 204 GVPVRVELGPKDIAKGTVVAVQRL 275
           G+  R+EL  K+++      V RL
Sbjct: 72  GLVDRLELSGKNLSGKVADDVFRL 95


>01_06_0850 +
           32444475-32444722,32445159-32445312,32445763-32446160,
           32446476-32446571,32446650-32446722,32446854-32447136,
           32447225-32447556,32447642-32447912,32448502-32448783,
           32449106-32449518
          Length = 849

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 322 LLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 411
           L NSL+K T   L+G+R I++  Y  L+NG
Sbjct: 99  LQNSLLKRT---LRGERYIKLYSYRYLING 125


>01_05_0126 -
           18391879-18391937,18392021-18392102,18392508-18392667,
           18392739-18392807,18392850-18392992,18393069-18393203,
           18393283-18393341,18394090-18394187,18394347-18394510,
           18394586-18394647,18394803-18394977,18396331-18396588,
           18396694-18396841,18398458-18398813
          Length = 655

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 5   RPMRRRDTG-RGGSVRHNGVQLGGRAPGAN 91
           RP RR+  G RGG    N  Q G RA G+N
Sbjct: 16  RPSRRQHPGGRGGRSSDNAGQSGSRATGSN 45


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 535 SRHQPWVRNHCAYHLNLQDNCLNLTAAYTRLVKISPSSLRYLEEVTE 675
           SR +PW +  C    +LQ     + A     ++++ SS+RYL  + E
Sbjct: 303 SRLRPWSKCKCHAQRHLQQAHFTVLAPTPMRLQLANSSVRYLAGIAE 349


>02_04_0221 -
           21021886-21022144,21022227-21022345,21022681-21022920,
           21023064-21023171,21023272-21023331,21023991-21024066,
           21024155-21024360,21024722-21024784,21024925-21025012,
           21025515-21026015,21027206-21027603
          Length = 705

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 283 SPVRRCTATTVPFAISLGPNSTLTGTPFNSQW 188
           SP +      VP A S  P+S++T + F SQW
Sbjct: 249 SPSQPLPLPPVPVASSSIPSSSITSSQFQSQW 280


>01_05_0217 -
           19390788-19391048,19392205-19392438,19393474-19393798,
           19395781-19396121,19396422-19396502,19396640-19396759,
           19397028-19397129,19397811-19397946,19398508-19398654,
           19399024-19399337
          Length = 686

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 215 YWNPLQLPVVKLPARRIVIPVVAF 144
           YW+ L +P V L  RR++I V  F
Sbjct: 356 YWDNLSIPFVYLTIRRLIIAVAFF 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,260,035
Number of Sequences: 37544
Number of extensions: 420770
Number of successful extensions: 1554
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)