Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L08
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...   196   2e-50
U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    94   8e-20
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    29   2.7  
U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z74030-1|CAA98440.3|  266|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score =  196 bits (477), Expect = 2e-50
 Identities = 97/219 (44%), Positives = 132/219 (60%)
 Frame = +3

Query: 15  VAEIQAVVVPCGITASSSADERQALMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 194
           VA +Q +VVP G       + +Q+L D+   +  DL+A GV+AE D R+NY+ GWKFNHW
Sbjct: 374 VAAVQVIVVPVGF----KTENKQSLFDAVDKVTKDLVADGVKAEHDLRENYNAGWKFNHW 429

Query: 195 ELKGVPVRVELGPKDIAKGTVVAVQRLTGDKMVFKRDSVAKDIVELLDKTHAQMFERATK 374
           ELKGVP+R E+GP D+AK  V AV R  G+K     + ++K +  LLD+ H  M+ +   
Sbjct: 430 ELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKKQLSLEGLSKTVKSLLDEIHTAMYNKVLA 489

Query: 375 DRDARLSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSARTEDDPNVDVKAPAMG 554
            RD+ L S T  E+F   L+EK I+L+PFCG   CE+ IK  S R       D +   MG
Sbjct: 490 QRDSHLKSTTCIEEFKKLLDEKCIILSPFCGRPDCEEEIKKASTRE------DGEGAQMG 543

Query: 555 AKSLCIPFEPPRQLSESDRCIHPACKNKPKFITLFGRSY 671
           AK+LCIP + P+Q   S +C+ P+C    K   LFGRSY
Sbjct: 544 AKTLCIPLDQPKQELPS-KCLFPSCTYNAKAFALFGRSY 581


>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 41/78 (52%), Positives = 55/78 (70%)
 Frame = +3

Query: 15  VAEIQAVVVPCGITASSSADERQALMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 194
           VA +Q +VVP G       + +Q+L D+   +  DL+A GV+AE D R+NY+ GWKFNHW
Sbjct: 374 VAAVQVIVVPVGF----KTENKQSLFDAVDKVTKDLVADGVKAEHDLRENYNAGWKFNHW 429

Query: 195 ELKGVPVRVELGPKDIAK 248
           ELKGVP+R E+GP D+AK
Sbjct: 430 ELKGVPIRFEVGPNDLAK 447


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
            protein Y57A10A.31 protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/87 (21%), Positives = 34/87 (39%)
 Frame = +3

Query: 321  IVELLDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKND 500
            ++ELL+    ++F+R T++R+A           TA     N      CG + C   I   
Sbjct: 775  LIELLETLSNEVFKRETRNREAEEIPNLVCPICTAETGISNDFYRLECGHVMCRTCINTQ 834

Query: 501  SARTEDDPNVDVKAPAMGAKSLCIPFE 581
                 D+   +++    G   +  P E
Sbjct: 835  IRSRIDEQQFNIRCEIDGCHRVLTPAE 861


>U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical
           protein B0207.11 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 436 KKTFYLHHFVERYRVKITLRTTVQGQKTT 522
           +K + L+H V+ Y+V+I L  T+Q Q+ T
Sbjct: 213 RKHYSLNHLVKFYKVRILLPDTIQKQQLT 241


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 282 DKMVFKRDSVAKDIVELLDKTHAQMFERATKDRDARL-SSVTKWEDFTAALEE 437
           +K+  + + V KDI EL +KT  ++ E   ++ D ++    TK E F   LE+
Sbjct: 641 EKLTRQINVVEKDIKELTEKTENKIKEEDDEESDIKMDEDETKEEKFKQDLED 693


>Z74030-1|CAA98440.3|  266|Caenorhabditis elegans Hypothetical
           protein D1054.1 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 356 HLRVCFIKEFNNVFCNRITFEDHLITGETLYCY 258
           H+ +  +K++ N+  N+    DHLI+     CY
Sbjct: 127 HISITKLKKWENIMINKFDSRDHLISCLLASCY 159


>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 333 LDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNI 446
           LDK   +  E A +DRD ++S    +EDF  A+E+ +I
Sbjct: 170 LDKIADKTLEEADQDRDGKIS----FEDFCRAMEKTDI 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,608
Number of Sequences: 27780
Number of extensions: 369050
Number of successful extensions: 1258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)