Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L07
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 86 6e-18
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.0
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 4.0
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 27 4.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 5.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.0
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 7.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.0
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 9.3
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 9.3
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 85.8 bits (203), Expect = 6e-18
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 3/198 (1%)
Frame = +3
Query: 111 ILHSPPGEFNEVFNDVRVLLNNDTLLKEGAIGAFAQYNKDQLTPVRLEGSELYTLITDHN 290
I SPPGE N+V +D+R + +D +E Y++D + V + E + D N
Sbjct: 10 IRESPPGEVNQVVHDIRDIGLSD---EEAIHEQLKLYHEDYNSSVSISDDEKVIISAD-N 65
Query: 291 ELGGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKHGA 470
L G R++D + SF ++ EA E Y A + +++ + HY
Sbjct: 66 RLEGNRYYDQVLQKSFTINYETMEAENVEDYTE---AIKIPDEIVKQIKKVASDHYLSDV 122
Query: 471 SL-VVGRT--VDSGTVQLVACIEDHQFQPKNYWNGRWRSVWSLTVGGPATELRGTLRVQV 641
+ ++ ++ V+S T+ LV+ ++ PKNYWNG WR + + V +L G ++V
Sbjct: 123 TFGIIKKSDEVESFTIVLVSS----KYNPKNYWNGSWRCICNYNVS--EKKLEGRSHIRV 176
Query: 642 HYYEDGNVQLVSSKEIKA 695
HYYEDGNV L +S+ I A
Sbjct: 177 HYYEDGNVWLDASRPISA 194
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.7
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = +1
Query: 208 PSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFS-ILAPSVLSGMTIYAKKRPSMNPT 384
P ++T +NS ++ + + S+P T++ V + I + SVL+ T A +N +
Sbjct: 3407 PITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASS-SILNSS 3465
Query: 385 SPIERLSLGGRHLMRS*RRTWLHTTSMVLV*WWVAQSTLVRYSWSPVSKITSFNPRTIGT 564
+PI S+ S + + T+S+V + S+++ Y+ S VS + S N + +
Sbjct: 3466 TPITSSSVLNSSTPIS--SSTVITSSVV-----IGSSSVLSYASSIVSSV-SLNSSLLSS 3517
Query: 565 VGG 573
GG
Sbjct: 3518 SGG 3520
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 208 PSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTS 387
PS + S Y +PS +SP+ + + +S +PS Y+ PS +PTS
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631
Query: 388 P 390
P
Sbjct: 1632 P 1632
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y + +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1603 SPSYSATSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1589 SPSYSPTSPSYSPTSPSYS-ATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 208 PSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTS 387
PS + T S Y +PS +SP+ + + +S +PS Y+ PS +PTS
Sbjct: 1604 PSYSAT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1659
Query: 388 P 390
P
Sbjct: 1660 P 1660
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1596 SPSYSPTSPSYSATSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S Y +PS +SP+ + + +S +PS Y+ PS +PTSP
Sbjct: 1701 SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 558 WNGRWRSVWSLTVGGPATELRGTLRVQVHYYEDGNV 665
W+ W S + L + PA G +++++ DGN+
Sbjct: 604 WSANWVSFFDLNLQLPAPRAAGKRKIEMNATVDGNL 639
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 354 RKEASEYEPYEPDRAAEPWRAA 419
R+EAS++ + D +AE WRAA
Sbjct: 317 RREASKFGGFAADVSAERWRAA 338
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = +3
Query: 153 DVRVLLNNDTLLKEGAIGAFAQYNKDQ 233
+V+ +++++T +++G + + AQ+ KDQ
Sbjct: 736 EVQNMIDDETTIQKGEVASMAQFAKDQ 762
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 171 NNDTLLKEGAIGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFDPRSK 329
N DTLL++G++ +DQ P + S + H E D SK
Sbjct: 167 NVDTLLRDGSLENVNNSRQDQFLPYKTFSSTISNSDFLHRESSFSSLIDEESK 219
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 271 HSSPTTTNLVAE-GFSILAPSVLSGMTIYA 357
HS P+ NL +E GFS+L P +++ ++YA
Sbjct: 237 HSQPSP-NLSSEIGFSLLRPGLITVKSVYA 265
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 456 SVQPRTPLAPHQVPPAKAQP 397
+VQ ++PL P + PP KA P
Sbjct: 6 AVQSKSPLLPKENPPVKAFP 25
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/48 (20%), Positives = 22/48 (45%)
Frame = -1
Query: 596 DRQRPHRTPPTVPIVLGLKLVIFDTGDQLYRTRVDCATHH*TSTMLVV 453
D+ + P + ++ + G+ +YRT + TH +T L++
Sbjct: 149 DKMNNNIKKPNLEFLMPCTITKLSKGENIYRTHIHTTTHGELTTKLLI 196
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 478 WWVAQSTLVRYSWSP 522
WWV VR+ WSP
Sbjct: 413 WWVPYLEYVRFMWSP 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,565
Number of Sequences: 5004
Number of extensions: 66075
Number of successful extensions: 312
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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