Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L07
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 95 6e-20
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 1.8
07_01_0206 + 1484107-1484583 30 1.8
03_02_0578 + 9603118-9605633,9605766-9605781 30 1.8
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131... 30 2.4
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 29 5.5
06_02_0214 + 13141213-13143741 29 5.5
02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372 29 5.5
01_07_0346 + 42889121-42890406,42896115-42896118 29 5.5
08_02_1347 - 26300295-26300483,26300598-26300657,26300850-263009... 28 7.3
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508... 28 7.3
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 28 9.7
01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052 28 9.7
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 95.1 bits (226), Expect = 6e-20
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 12/193 (6%)
Frame = +3
Query: 150 NDVRVLLNNDTLLKEGAIGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFDPRSK 329
+DVR LL ++ + + A AF ++NK L + L +IT + EL + DPR+
Sbjct: 3 DDVRALLGDEAVYEAAAAEAFPEHNKAHLVALELPDRSGDIIITTYGELDKNNYLDPRTA 62
Query: 330 CSFRYDHLRKEASEYEPYE----PDRAAEPWRAALDEELTAYVAAHYKHGASLVVGRTVD 497
DH++++ ++ P P E +R+ALD EL+ YV Y G + V R
Sbjct: 63 QVATVDHIKQKCTKLRPAADEELPSAYIEDFRSALDVELSKYVGEAYPKGILIEVSRKFW 122
Query: 498 SGTVQLVAC-IEDHQFQP-----KNYWNGRWRSVWSLTV--GGPATELRGTLRVQVHYYE 653
+L + DH+F ++ NG WRS+W+L G E++G ++V HY+E
Sbjct: 123 HSYEKLFHIQLLDHRFAHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQVGAHYFE 182
Query: 654 DGNVQLVSSKEIK 692
+GNVQL ++ + K
Sbjct: 183 EGNVQLDTNIDCK 195
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 235 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 390
S P S P +SP+ + + +S +PS G Y+ PS +PTSP
Sbjct: 1554 SSPVYSPGPGYSPTSPSYSP-ASPSYSPTSPSYTPGSPTYSPTSPSYSPTSP 1604
>07_01_0206 + 1484107-1484583
Length = 158
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +3
Query: 423 DEELTAYVAAHYKHGASLVVGRTV--DSGTVQLVACIEDHQFQ--PKNYWNGRWRSVWSL 590
++E A+V H A++ VGR D+ Q + Q Q P Y W S +
Sbjct: 20 EDEKAAFVNLHNSARAAVGVGRVAWNDALAAQALQHARYCQTQHIPGPYGENLWWSYGAG 79
Query: 591 TVGGPATELRGTLRVQVHYYEDGN 662
T G PA + L + YY D N
Sbjct: 80 TTGTPADAMSYWLAEKAKYYYDSN 103
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 309 FFDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKH--GASLVV 482
+ D R + Y+++ K Y D PW+ L+ + A HY H A ++
Sbjct: 571 YCDERGEMILVYEYMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAII 630
Query: 483 GRTVDSGTVQL 515
R V S + L
Sbjct: 631 HRDVKSANILL 641
>01_05_0777 +
25110356-25110662,25112569-25112789,25112880-25113127,
25113274-25113664,25113751-25114155,25115260-25115366,
25115833-25116170,25116206-25116486,25116645-25116889,
25116998-25117382,25117459-25117884
Length = 1117
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 618 VTLWQARRPSKTTPNATDRSNSSWVETGD 532
VT+W+ RP+K TP + N +V T D
Sbjct: 538 VTVWETGRPTKATPPIEMQKNQRYVHTYD 566
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 606 QARRPSKTTPNATDRSNSSWVETGDLRYRRPA 511
Q RRP+ P+ TD S+ S+ D RY+R A
Sbjct: 123 QQRRPASGRPSGTDGSDFSYRMVVDSRYQRVA 154
>06_02_0214 + 13141213-13143741
Length = 842
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 309 FFDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKH--GASLVV 482
+ D R++ Y+++ K + Y D + W+ L+ + A HY H A ++
Sbjct: 560 YCDERNEMILVYEYMEKGTLKSHLYGSDNPSLNWKQRLEICIGAARGLHYLHTGSAKAII 619
Query: 483 GRTVDSGTVQL 515
R V S + L
Sbjct: 620 HRDVKSANILL 630
>02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372
Length = 290
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = +3
Query: 312 FDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKHGASLVVGRT 491
+DP YD + A +YE YE + A W E +A V +HY A VVGRT
Sbjct: 139 YDPLLDYPINYDIAEQYAYDYERYEAE--ARAWTR---EFSSAPVVSHYPPNA--VVGRT 191
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 654 PHNNELEHVEFHVTL-WQARRPSKTTPNATDRSNSSWVETGDLRYRRPAVP 505
P E +H E L + RR S+ TP AT+ ++SS V R +P+VP
Sbjct: 164 PPTREDQHGEPDARLDIERRRNSRRTPRATEGASSSRVSPRHGREDQPSVP 214
>08_02_1347 -
26300295-26300483,26300598-26300657,26300850-26300933,
26301410-26301495,26302112-26302184,26302287-26302385,
26302526-26302639,26302751-26302807,26302908-26302994
Length = 282
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 281 GDECIQLGAFETYGRELILVVLSEGSNSTFLEQGIVIQQHP 159
G E LG F+ + L ++++SE + TF+ ++ +HP
Sbjct: 63 GMEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHP 103
>06_03_0769 +
24448483-24448825,24449228-24449305,24450812-24450855,
24451299-24451362,24451543-24451634,24451988-24452234,
24452632-24452775,24452905-24453011,24453096-24453149,
24453221-24453304,24454448-24454611,24455003-24455147
Length = 521
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 232 NSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSPIERLSL 408
+S+ VS S ++P ++ + L+ + + +Y+++RPS SPI RLS+
Sbjct: 222 SSKDEVSSVSSYNKANPESSLRSSVSMHSLSSRLSTSEPLYSRERPSFPSYSPIPRLSV 280
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 254 FETYGRELILVVLSEGSNSTFLEQGIVIQQHPHI 153
FE+ +LI V++S SN LE+ ++Q+H HI
Sbjct: 1080 FESKETKLISVIISNCSNLISLEESFLLQEH-HI 1112
>01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052
Length = 492
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 226 RINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRP 369
++ P V A S + S T L ++ L+ + +GMT YA+ P
Sbjct: 361 KLGLSPSVFAAGSLVDSGTVITRLPPAAYAALSSAFRAGMTRYARAEP 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,332,943
Number of Sequences: 37544
Number of extensions: 486759
Number of successful extensions: 1564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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