Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L07
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.46 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 211 SLNTTRINSRPYVSKAPSCIHSSPTTTNL 297
           SL+ T  N + Y S+    +HS P+T N+
Sbjct: 364 SLDNTNTNDQDYSSQNYLTVHSFPSTLNI 392


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 312 FDPRSKCSFRYDHLRKEAS-EYEPYEPDRAAEPWRAALDEELTAYVA 449
           F+PR+  S  YD  ++E S E   +E       W+   DEE T   A
Sbjct: 166 FEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPE-DEECTEATA 211


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 193 KVLLEPSLNTTRINSRPYVSKAPSCIHSSPTTTN 294
           K+L+ PS+  T    R  + ++P C   +P  TN
Sbjct: 188 KLLIGPSIRITPAKKRIKLEQSPLC-PPAPRLTN 220


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 516 VACIEDHQFQPKNYWNGRWRSVWSLTVGGPATELRGT-LRVQVHYYEDGNVQLVSS 680
           + C+      P+  W  +  S   L + GP T L G+ L ++    ED  +   S+
Sbjct: 257 LVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSA 312


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 516 VACIEDHQFQPKNYWNGRWRSVWSLTVGGPATELRGT-LRVQVHYYEDGNVQLVSS 680
           + C+      P+  W  +  S   L + GP T L G+ L ++    ED  +   S+
Sbjct: 257 LVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSA 312


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 331 VLSGMTIYAKKRPSMNPTSPIERLSLGGRHL 423
           +LSG  I  KKR  M    P +   + G ++
Sbjct: 133 LLSGGIILRKKREFMQKIWPFKEYQMNGNNI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,077
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)