Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L04
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 165 6e-42
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 77 3e-15
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 29 0.57
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 28 1.3
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 5.3
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.0
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 7.0
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 165 bits (401), Expect = 6e-42
Identities = 85/210 (40%), Positives = 131/210 (62%), Gaps = 1/210 (0%)
Frame = +2
Query: 155 LPKEEEIK-NVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVE 331
LP E K N + + +L S RL+ ++ E G K + G +E D EY LIV+
Sbjct: 65 LPSEVANKFNDNNENIYQLLNSTRLRDIIEGTEKYKGTE--KQAITGNIEDDLEYHLIVD 122
Query: 332 ANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKNNEIL 511
+N++A+EID EI +HR V++ Y RFPEL SL++ +Y +TV L NDLD +K
Sbjct: 123 SNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSLLNDLDNSKTK--- 179
Query: 512 QSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVESRMTFI 691
SFL AT+M+++ TA+TT GK L ++ + C+ +L K +I EYV+SR++ +
Sbjct: 180 LSFLPSATVMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVV 239
Query: 692 APNITAIVGASTAAKILGVAGGLSKLSXMP 781
APN++A+VG++TAA ++G+AGGL++L P
Sbjct: 240 APNLSAVVGSTTAANLIGIAGGLTRLGKFP 269
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 77.0 bits (181), Expect = 3e-15
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Frame = +2
Query: 320 LIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKN 499
+IV+A + ++D E+ VR+ Y FPE+ +I L Y R +K +G R K
Sbjct: 162 MIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKIIQDNLAYARVIKAMGM---RTKC 218
Query: 500 NEI-LQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVES 676
+E L + + A + G +++ +L+ I D EL ++++Q+ EY+ +
Sbjct: 219 SETDFSDILPEEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLELASYRAQLSEYLRN 278
Query: 677 RMTFIAPNITAIVGASTAAKILGVAGGLSKLSXMP 781
RM IAPN+TA+VG A+++ AG L L+ P
Sbjct: 279 RMQAIAPNLTALVGELVGARLIAHAGSLMNLAKQP 313
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 29.5 bits (63), Expect = 0.57
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 536 IMIVSVTASTTQGKLLSQIELEEINEACDMAS----ELNNFKSQIYEYVESRMTFIAPNI 703
+ V+ A K+L ++ AC M + LN S YEYV+ R +I PN+
Sbjct: 140 VSFVAYNAMQLNKKVLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYVKERSPWIGPNM 199
Query: 704 TAIVGASTAAKIL 742
+ I S +I+
Sbjct: 200 SLIFQLSEYQQII 212
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 509 LQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVESRMTF 688
L++ +T+ T MIV T GK+ S+ EE+NE D+ + N + + V R++F
Sbjct: 170 LRNAITEKTKMIVINTPHNPLGKIFSE---EELNEIADLVLKHNLL--VVSDEVYDRLSF 224
Query: 689 I 691
+
Sbjct: 225 V 225
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 505 FIILSPVQIIAKFFHCPY 452
F L+P++I KFFHC +
Sbjct: 956 FNSLTPIEIAKKFFHCDH 973
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 748 HTKDFCCC*CSNNGSYV--WCNKSHSTFNI 665
H CC SNNG Y+ CN++ + F++
Sbjct: 312 HPSVVCCVKFSNNGKYLATGCNQAANVFDV 341
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 446 EYIRTVKELGNDLDRAKNNEILQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDM 625
+Y T++EL N + A N + + + + T Q Q+E + I E DM
Sbjct: 347 KYEATIQELQNQIGTAPNAPKISNSNWEEERRALKADNQTLQ----KQLE-KAIQERQDM 401
Query: 626 ASELNNFKSQI 658
+ LNNFK+ +
Sbjct: 402 SDFLNNFKADM 412
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 527 E*ENSVIFHYS*PCP-NHCQVLSLSLCIPME**LEIPIQETVSDICHG 387
E +N VI H S PC + LSLSLCIP+ +E ++ ++ +I G
Sbjct: 669 ESKNEVI-HSSLPCSKSSLYQLSLSLCIPL---IEGHLRNSLEEILFG 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,492
Number of Sequences: 5004
Number of extensions: 44299
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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