Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L04
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 184 9e-47
07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217... 175 3e-44
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 86 3e-17
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 86 3e-17
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 62 4e-10
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 31 1.4
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 4.1
07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340... 28 9.6
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 184 bits (447), Expect = 9e-47
Identities = 90/209 (43%), Positives = 139/209 (66%)
Frame = +2
Query: 155 LPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEA 334
+P E + + ++KL+ + R +M ++E + ++E DPEYQLIV+
Sbjct: 241 MPDLESLNYDDLDSVSKLQKTQRYNDIMQKVENALQKGTDFSNQRSILEEDPEYQLIVDC 300
Query: 335 NNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKNNEILQ 514
N ++V+I+ EI IIH F+RDKY+ +FPELESL+ P++Y R V+++GN++D + L+
Sbjct: 301 NALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVQKIGNEMDLTLVD--LE 358
Query: 515 SFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVESRMTFIA 694
L A IM++SVTASTT GK LS+ L + EAC+ A L+ K ++ E+VESRM +IA
Sbjct: 359 GLLPSAIIMVISVTASTTSGKPLSEENLVKTIEACERALTLDAAKKKVLEFVESRMGYIA 418
Query: 695 PNITAIVGASTAAKILGVAGGLSKLSXMP 781
PN++AIVG++ A+K++G AGGL L+ MP
Sbjct: 419 PNLSAIVGSAVASKLMGTAGGLGALAKMP 447
>07_01_0304 +
2177044-2177046,2177173-2177235,2177323-2177460,
2177886-2178778,2178935-2179005,2179132-2179234,
2180017-2180092,2180870-2180977
Length = 484
Score = 175 bits (426), Expect = 3e-44
Identities = 88/205 (42%), Positives = 135/205 (65%)
Frame = +2
Query: 167 EEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVA 346
E + + ++KL+ + +M ++E + ++E DPEYQLIV+ N ++
Sbjct: 44 ESLNYDDLDSVSKLQKTQCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALS 103
Query: 347 VEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKNNEILQSFLT 526
V+I+ EI IIH F+RDKY+ +FPELESL+ P++Y R V+++GN++D + L+ L
Sbjct: 104 VDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVD--LEGLLP 161
Query: 527 QATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVESRMTFIAPNIT 706
A IM+VSVTASTT GK LS+ L + EAC+ A L+ K ++ ++VESRM IAPN++
Sbjct: 162 SAIIMVVSVTASTTNGKPLSEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLS 221
Query: 707 AIVGASTAAKILGVAGGLSKLSXMP 781
AIVG++ A+K++G AGGL L+ MP
Sbjct: 222 AIVGSAVASKLMGTAGGLGALAKMP 246
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 86.2 bits (204), Expect = 3e-17
Identities = 46/156 (29%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Frame = +2
Query: 320 LIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGN--DLDRA 493
+I++A + ++D E+ VR+ Y FPEL ++ ++Y + VK +G+ + +
Sbjct: 159 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRTNAESL 218
Query: 494 KNNEILQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVE 673
+EIL +A + +V + T+ +S+++L I E CD L+ +++Q+++Y+
Sbjct: 219 DFSEILSDDEVEAQLKEAAVISMGTE---VSELDLLNIRELCDQVLALSEYRAQLFDYLR 275
Query: 674 SRMTFIAPNITAIVGASTAAKILGVAGGLSKLSXMP 781
SRM IAPN+TA+VG A+++ G L L+ P
Sbjct: 276 SRMNTIAPNLTALVGELVGARLIAHGGSLVNLAKQP 311
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 86.2 bits (204), Expect = 3e-17
Identities = 46/156 (29%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Frame = +2
Query: 320 LIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGN--DLDRA 493
+I++A + ++D E+ VR+ Y FPEL ++ ++Y + VK +G+ + +
Sbjct: 159 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRTNAESL 218
Query: 494 KNNEILQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVE 673
+EIL +A + +V + T+ +S+++L I E CD L+ +++Q+++Y+
Sbjct: 219 DFSEILSDDEVEAQLKEAAVISMGTE---VSELDLLNIRELCDQVLALSEYRAQLFDYLR 275
Query: 674 SRMTFIAPNITAIVGASTAAKILGVAGGLSKLSXMP 781
SRM IAPN+TA+VG A+++ G L L+ P
Sbjct: 276 SRMNTIAPNLTALVGELVGARLIAHGGSLVNLAKQP 311
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 62.5 bits (145), Expect = 4e-10
Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Frame = +2
Query: 320 LIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKN 499
++++A + +D +I VR+ + FPEL ++ Y + + + + A+
Sbjct: 170 MVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVNDNYIYAKLADYIKDKSELAEK 229
Query: 500 N--EILQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVE 673
+ ++ + V A + G+ LS+++L + + L+ ++ +YEY+
Sbjct: 230 DISKLADLIGDEDKAKEVVEAAKASMGQDLSEVDLMNVKQFAQRVMNLSEYRKNLYEYLV 289
Query: 674 SRMTFIAPNITAIVGASTAAKILGVAGGLSKLSXMP 781
++M IAPN+T+++G A+++ AG LS L+ P
Sbjct: 290 TKMNDIAPNLTSLIGEVVGARLISHAGSLSNLAKCP 325
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +2
Query: 164 EEEIKNV--SIRELAKLRYSDRLKR-VMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEA 334
+E+++N+ L K S RL+ ++S+ EC + ++ +ES+PEYQ +V
Sbjct: 3254 DEDLQNMMEEYSSLEKANSSPRLRIFLVSQTECEDSSLDSRS-----LESEPEYQFVVAV 3308
Query: 335 NNVA 346
NN+A
Sbjct: 3309 NNLA 3312
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 194 ELAKLRYSDRLKRVMSEIECNAGNNRNKVEV-AGLMESDPEYQLIVEANNVAVE 352
E A+LR S R+K + E C+ +NK+ V +S P Y I++A NV E
Sbjct: 727 EAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSE 780
>07_01_0451 -
3404749-3405171,3405444-3405599,3405711-3406583,
3406847-3406942
Length = 515
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 203 KLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQL 322
KL + ++RV + ++ + G K+EV GL+E++ Y +
Sbjct: 90 KLNAEEFIRRVDAILQQHNGGGVEKIEVIGLLENENAYHI 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,585
Number of Sequences: 37544
Number of extensions: 240455
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -