Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_L04
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 105 3e-23
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 8e-17
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 30 1.8
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08) 29 4.2
SB_2763| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.46) 25 5.1
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 29 5.6
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36) 29 5.6
SB_53429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_18137| Best HMM Match : ANF_receptor (HMM E-Value=0.66) 28 7.4
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 28 9.8
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 105 bits (253), Expect = 3e-23
Identities = 50/81 (61%), Positives = 64/81 (79%)
Frame = +2
Query: 539 MIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVESRMTFIAPNITAIVG 718
M++SVTASTTQG+ L E+E + EAC M ++L + K +I+EYVESRM FIAPNI+ IVG
Sbjct: 1 MVISVTASTTQGEKLDDEEIERVFEACKMVTDLLDAKLKIFEYVESRMAFIAPNISIIVG 60
Query: 719 ASTAAKILGVAGGLSKLSXMP 781
ASTAAK++G AGGL+ L MP
Sbjct: 61 ASTAAKLMGAAGGLTNLGKMP 81
>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 84.6 bits (200), Expect = 8e-17
Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Frame = +2
Query: 320 LIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKN 499
+IV+A ++ ++D E+ R+ Y FPEL ++ L Y +TVK++G R K
Sbjct: 72 MIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAKTVKKMGM---RTKA 128
Query: 500 NEI-LQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVES 676
E+ L + + A + G +SQ +++ I CD E+ +++Q+Y+Y+++
Sbjct: 129 GELDFSEILPEEVEEELKTAAEISMGVEISQEDIDNIIFLCDQIMEVAEYRAQLYDYLKN 188
Query: 677 RMTFIAPNITAIVGASTAAKILGVAGGLSKLSXMP 781
RMT IAPN+T +VG A+++ AG L L+ P
Sbjct: 189 RMTAIAPNLTVLVGELVGARLIAHAGSLLNLAKHP 223
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 650 SQIYEYVESRMTFIAPNITAIVGASTAAKILGVAGGLSKL 769
SQ++ Y+++ +++AP IT + G L AG LS L
Sbjct: 1014 SQLFVYIQTIQSYLAPPITMVFGLGILWPRLSEAGALSGL 1053
>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
Length = 739
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = +2
Query: 152 VLPKEEEIKNVSIRELAKLRYS-DRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIV 328
V + EI+N E+ K++ ++LK+++ + N +++E EY+
Sbjct: 103 VTKTQMEIQNAL--EVVKIQAEKNQLKKIIEGLNSQLKNISDELEGTKKRLKKAEYERD- 159
Query: 329 EANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKNNEI 508
A + + EIA +++ + + QKR EL+S I++ E + + + N+
Sbjct: 160 SAQSYVTNLKQEIATLNKELHVERQKRKEELQSKIVSSKE-LHFFEPTQISTSHEQGNQD 218
Query: 509 LQSFLTQA 532
L+S L +A
Sbjct: 219 LKSALAEA 226
>SB_2763| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.46)
Length = 336
Score = 24.6 bits (51), Expect(2) = 5.1
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Frame = +2
Query: 275 KVEVAGLMESDPEYQLIVEANNVAVEI--------DGEIAIIHRFVRDKYQKRFPELESL 430
K ++ L + P + VE N+ ++ D + +R + PE++
Sbjct: 22 KRPISDLNPNAPSWNQSVEMQNIRADVSSAENHGHDKSFEKLAATLRQGFTLPRPEIQRF 81
Query: 431 IITPLEYIRTVKELGNDLDRAKNNE------ILQSFLTQATIMIVS-VTASTTQG 574
PL Y ++ N++DR ++E +LQ F A +I S VT T G
Sbjct: 82 DENPLNYWSFIRSFENNIDRNTSDESEKLTYLLQYFSGDAKRVISSCVTMDPTVG 136
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 9/38 (23%), Positives = 16/38 (42%)
Frame = +2
Query: 590 IELEEINEACDMASELNNFKSQIYEYVESRMTFIAPNI 703
I+ ++ A L N+K ++ E +AP I
Sbjct: 168 IKASDVQSLMGFADRLKNYKPDFFDLNELECRLLAPRI 205
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Frame = +2
Query: 164 EEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAG--LMESDPEYQLIVEAN 337
E E+K ++ E + + LKR + E++ A N R +E + + P+ + ++E N
Sbjct: 703 ESEVKELTAHENLLVDEIENLKRELGEVKRTAENLRKDLEGRDEVIKQLRPKVKELLEEN 762
Query: 338 -NVAVEIDG------EIAIIHRFVRDKYQKRFPELESL 430
++ VE++ ++ +R V DKY EL+ L
Sbjct: 763 DSLKVELESLKQSYEDLEEQYRVVEDKYLSAQKELKVL 800
>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
Length = 574
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 653 QIYEYVESRMTFIAPNITAIVGASTAAK--ILGVAGGLSK 766
++Y+ R TFIAP TA V +TA L V GGLS+
Sbjct: 473 EVYDPSTERWTFIAPMATARVHCATAVHDGKLWVFGGLSE 512
>SB_53429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 739 DFCCC*CSNNGSYVWCNKSHSTFNILIYLRF 647
+FC C SNN +Y WC ++ + + +Y F
Sbjct: 3 EFCFCPSSNNNTY-WCLRTINATHNFLYCEF 32
>SB_18137| Best HMM Match : ANF_receptor (HMM E-Value=0.66)
Length = 189
Score = 28.3 bits (60), Expect = 7.4
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +2
Query: 455 RTVKELGNDLDRAKNNEILQSFLTQATIMIVSVTASTTQGKLLSQIELEEI-NEA-CDMA 628
R V+ELGN +N A+ M ++V A + LL + I N+ CD
Sbjct: 36 RHVRELGNSFHAGEN---------YASAMSIAVDAVNKRKDLLPGRNISFIWNDTNCD-- 84
Query: 629 SELNNFKSQIYEYVESRMTFIAPNITAIVGASTAA 733
ELN ++ +Y+ FI P T A +AA
Sbjct: 85 -ELNTIRALVYQLNAGVTAFIGPGCTCNTAARSAA 118
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 27.9 bits (59), Expect = 9.8
Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 4/207 (1%)
Frame = +2
Query: 104 IEXKTKEXYDFAVPYPVLPKEE---EIKNVSIR-ELAKLRYSDRLKRVMSEIECNAGNNR 271
IE KT ++V L E E++ S++ EL LR S+ K VM +++ ++ ++R
Sbjct: 1360 IEYKTSTIQGYSVQIETLRGERQKMEMELGSVKTELVSLR-SEGEKVVMLKLQESSDSHR 1418
Query: 272 NKVEVAGLMESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 451
+ LME D E + I+ + F RD R ES
Sbjct: 1419 KE-----LMEKDGTENYKRELKEKEIMIEALRSERATFGRDLEALRQSHTESYKKEIAHK 1473
Query: 452 IRTVKELGNDLDRAKNNEILQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMAS 631
++EL ++ + + ++S + +M S + ++ ++E+ +E + +
Sbjct: 1474 EAMIQELYSEKSKLQGE--VES-MRYELMMAKSDSERVVGVEVEKRVEVYR-SEVVEKET 1529
Query: 632 ELNNFKSQIYEYVESRMTFIAPNITAI 712
++ + KSQ+Y+Y ES + F+ + A+
Sbjct: 1530 DIQSLKSQLYKY-ESEVAFLKQEVDAV 1555
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,070
Number of Sequences: 59808
Number of extensions: 306694
Number of successful extensions: 755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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