Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L02
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   6.0  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.9  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 218 CYLFWRVNYIESRCWVRGCIIIAKA 292
           CYLF R +Y E    ++ CII A A
Sbjct: 152 CYLFIRKDYYEETVMMQKCIIQAYA 176


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 298 ANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETC 405
           +N  +  PS+P  +    PT    SVS +   VETC
Sbjct: 101 SNYASNVPSTPSDSTQQPPTNTLPSVSASSQSVETC 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,712
Number of Sequences: 5004
Number of extensions: 55469
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)