Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L02
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58375| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               33   0.23 
SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  29   4.9  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3)                  28   8.5  

>SB_58375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +1

Query: 268 RMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKI 426
           R+ H  + R A+KDN + S       TKP+K P S S+    V+   IP +KI
Sbjct: 54  RLCHGQRPRKASKDNNEESVERDELITKPSKSP-SQSSLDSSVDELKIPLVKI 105


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +1

Query: 268 RMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKI 426
           R+ H  + R A+KDN + S       TKP+K P S S+    V+   IP +KI
Sbjct: 54  RLCHGQRPRKASKDNNEESVERDELITKPSKSP-SQSSLDSSVDELKIPLVKI 105


>SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 MLGKRMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVS 378
           +  K ++  S+GR A     +P SPG+ P T P   PG  S
Sbjct: 28  LCAKTLNDQSRGRSAEPKPSRPVSPGV-PSTHPDSPPGDTS 67


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 253  EMLGKRMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKI 426
            E+   + +   K  ++ K NG  +   +T  TKP   P  V+T  + +     P I I
Sbjct: 2633 ELTPDKPNAQKKVHVSGKSNGSSTQKNLTNTTKPVATPYHVTTPNVSIRVIYGPTIHI 2690


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +1

Query: 322  SSPGITPYTKPTKIPGSVSTAKIKV--ETCPIPYIKIQDNAVLLPRFTAVAARSA 480
            ++PG T   K T  P + +  K     ET P+P          LP+ TA    +A
Sbjct: 2879 AAPGTTSVPKTTAAPETTAVPKTTAAPETTPLPKTTAAPETTTLPKITAAPETTA 2933


>SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3)
          Length = 333

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 659 KENFKMTKWLKLKTTQNYPISQKCLNLKISQT 754
           K      KWL+ +  QN PI Q+  NL++  T
Sbjct: 54  KRRMDRMKWLQQRRDQNLPIWQRVGNLRVQAT 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,557
Number of Sequences: 59808
Number of extensions: 383977
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)