Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L02
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    31   1.1  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    31   1.1  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        31   1.1  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    29   4.3  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    29   4.3  
AL117204-37|CAB55148.2|  248|Caenorhabditis elegans Hypothetical...    29   5.7  

>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 176 SAINNVD*RRILGLCYLFWRVNYIESRCWVRGCIIIAKAD*LTKTMESHQALELHHTLNQ 355
           SA++    + I  LC  FW+++  + R W+    I A  + +TK +  ++A+     L +
Sbjct: 393 SAVSASSCQEISRLCREFWKISESDLRIWLTRREIRAVNEIVTKPLTKNEAVRSRDALTK 452

Query: 356 QRFQVLF 376
             +  LF
Sbjct: 453 MLYSHLF 459


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 176 SAINNVD*RRILGLCYLFWRVNYIESRCWVRGCIIIAKAD*LTKTMESHQALELHHTLNQ 355
           SA++    + I  LC  FW+++  + R W+    I A  + +TK +  ++A+     L +
Sbjct: 393 SAVSASSCQEISRLCREFWKISESDLRIWLTRREIRAVNEIVTKPLTKNEAVRSRDALTK 452

Query: 356 QRFQVLF 376
             +  LF
Sbjct: 453 MLYSHLF 459


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 176 SAINNVD*RRILGLCYLFWRVNYIESRCWVRGCIIIAKAD*LTKTMESHQALELHHTLNQ 355
           SA++    + I  LC  FW+++  + R W+    I A  + +TK +  ++A+     L +
Sbjct: 393 SAVSASSCQEISRLCREFWKISESDLRIWLTRREIRAVNEIVTKPLTKNEAVRSRDALTK 452

Query: 356 QRFQVLF 376
             +  LF
Sbjct: 453 MLYSHLF 459


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 262 GKRMHHNSKG---RLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKIQD 432
           G R H+ S+G   R    D G P S G     +   +P SV++  I     P+P ++   
Sbjct: 94  GDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPIVR--- 150

Query: 433 NAVLLP 450
           + +LLP
Sbjct: 151 DGILLP 156


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 262 GKRMHHNSKG---RLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKIQD 432
           G R H+ S+G   R    D G P S G     +   +P SV++  I     P+P ++   
Sbjct: 94  GDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPIVR--- 150

Query: 433 NAVLLP 450
           + +LLP
Sbjct: 151 DGILLP 156


>AL117204-37|CAB55148.2|  248|Caenorhabditis elegans Hypothetical
           protein Y116A8C.10b protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = +1

Query: 253 EMLGKRMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKIQD 432
           ++  KR   N    L   D GKP   G  P  K +K P +V+  K+ +E+C IP + +  
Sbjct: 98  DLTNKRSEENLATWLTMLD-GKPR--GAAP--KSSKDPAAVAL-KVDIESCNIPVLIVGT 151

Query: 433 NAVLLP 450
            A L+P
Sbjct: 152 KADLVP 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,189
Number of Sequences: 27780
Number of extensions: 309815
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)