Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_L02
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   8.4  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +1

Query: 709 LSNQPKVPKFKNFSNASSGSHTYSNDLXNSXNSVKLELSQL 831
           LSN  K   + N++N  +  + Y+N+  N+   +   ++ +
Sbjct: 318 LSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 724 KVPKFKNFSNASSGSHTYSNDLXNSXNSVKLELSQL 831
           K PK  + +N+ S ++ Y+N+  N  N+      +L
Sbjct: 77  KEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKL 112


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 417 VWNWACLNFDFGSRNR 370
           ++ W  ++FDFGS  R
Sbjct: 40  IYEWKHIDFDFGSDER 55


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 635 PAALPFFSLLDSF 597
           PA LPF   LDSF
Sbjct: 275 PACLPFQHFLDSF 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,331
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)