Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_K24
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   134   7e-33
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   134   7e-33
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   1.6  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   2.7  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   3.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.3  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   8.3  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  134 bits (324), Expect = 7e-33
 Identities = 62/120 (51%), Positives = 83/120 (69%)
 Frame = +2

Query: 59  QHIRKLLKAGLVIKQPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 238
           Q+IRKL+K GLVI++P  +HSR R+RK   A+R GRH G+GKR+GTA ARMP   +W   
Sbjct: 39  QNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRR 98

Query: 239 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 418
                        + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 99  QRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  134 bits (324), Expect = 7e-33
 Identities = 61/120 (50%), Positives = 83/120 (69%)
 Frame = +2

Query: 59  QHIRKLLKAGLVIKQPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 238
           Q++RKL+K GLVI++P  +HSR R+RK   A+R GRH G+GKR+GTA ARMP   +W   
Sbjct: 39  QNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRR 98

Query: 239 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 418
                        + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 99  QRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -1

Query: 493 FLLXGGNT-----FLAALACLLYFIAAGL 422
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 224 VPSVAYAHWQYLFSYQS 174
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 384 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 292
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 463 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 374
           A L CLL  IAA   L+  H+ P L  LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 424 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 314
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 188 FSYQSHSDDPFYVPLCFCGHGR 123
           FS  + +D+P Y P+  CG G+
Sbjct: 37  FSQCAITDEPLYPPIVSCGLGK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,657
Number of Sequences: 5004
Number of extensions: 40011
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)