Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_K24
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   149   8e-37
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   5.7  
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    27   5.7  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    27   5.7  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   9.9  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  149 bits (362), Expect = 8e-37
 Identities = 69/120 (57%), Positives = 85/120 (70%)
 Frame = +2

Query: 59  QHIRKLLKAGLVIKQPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 238
           Q IR+L+  GL+I++PV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW   
Sbjct: 39  QSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRR 98

Query: 239 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 418
                        AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 99  MRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 491 PPXWRQYVPRGACVPPL 441
           P  W QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 281 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 123
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  WLQMQSMRSQTPTPVQHIRKLLKAGLVIKQP 106
           W QM SMR Q     Q+ +KLL   + + QP
Sbjct: 245 WTQMGSMRQQHARQQQYFKKLLHFLVSVMQP 275


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  WLQMQSMRSQTPTPVQHIRKLLKAGLVIKQP 106
           W QM SMR Q     Q+ +KLL   + + QP
Sbjct: 245 WTQMGSMRQQHARQQQYFKKLLHFLVSVMQP 275


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  WLQMQSMRSQTPTPVQHIRKLLKAGLVIKQP 106
           W QM SMR Q     Q+ +KLL   + + QP
Sbjct: 245 WTQMGSMRQQHARQQQYFKKLLHFLVSVMQP 275


>AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical
           protein Y17G9A.2 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 196 STSSLTKATVTTLSTCLCVFADTGAGVDCYRLLDDETSLE-QLTDVLDWSW 47
           S  S T   +T LS  LC F   G+    Y+L+D  +  + +L   +D+ W
Sbjct: 11  SCPSQTLVVLTLLSLFLCAFTAFGSAFLLYQLMDSTSCKDPRLPLKMDYVW 61


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 326 SPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 234
           SPSC    +  C  S  FC+  + F+E   F
Sbjct: 330 SPSCHPHILSICSCSTTFCSKCSAFIEQLEF 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,455,190
Number of Sequences: 27780
Number of extensions: 244313
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)