Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_K19
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618... 30 1.3
01_03_0136 - 12897284-12897399,12897679-12897727,12898563-128986... 30 1.3
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 29 1.8
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 29 2.4
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 2.4
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 29 2.4
01_05_0645 - 23899579-23904483 29 2.4
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 29 2.4
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 29 3.1
09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709 28 5.4
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319... 28 5.4
04_03_0873 + 20455860-20456042,20456864-20457102,20457596-204576... 28 5.4
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 27 7.2
02_04_0560 - 23875475-23875573,23876005-23876125,23876409-238764... 27 7.2
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 27 7.2
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 27 9.5
>12_02_0689 +
22160627-22160720,22161331-22161425,22161679-22161822,
22162256-22162513,22162595-22162666,22162759-22162824,
22163212-22163346,22163562-22163697,22163807-22163983,
22164086-22164192,22164281-22164421,22164604-22164740,
22164823-22165076,22165158-22165300,22165423-22165581,
22166049-22166461,22167369-22167474
Length = 878
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = -2
Query: 164 RYIIFHFSHYVLLINYFYTYNLKASSF--VMEKINKLI--LMNLLGN-RLY 27
+Y+I+ F ++V+ +FYT + ASS+ V+E+ KL + +L GN R+Y
Sbjct: 289 KYLIYPFFYHVVKGKHFYTLSNAASSYHKVLEENRKLYNQIQDLKGNIRVY 339
>01_03_0136 -
12897284-12897399,12897679-12897727,12898563-12898661,
12898781-12898886,12899209-12899304,12899394-12899542,
12899629-12899904,12900229-12900317,12900921-12901013,
12901110-12901205,12901337-12901444,12901703-12901895,
12902608-12902639,12902997-12903066
Length = 523
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -3
Query: 268 LDDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGD----TSFSISAIMYC*LITSTL 107
++D+++K+ ++LH TS +S+CS SI D T FS+ I Y LI + L
Sbjct: 339 IEDYMNKMDVQKSLHANTSGLIKDRKWSICSYSIFDNYDITVFSVLPI-YSKLIKAGL 395
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 141 AEMEN--DVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQAS 314
AE EN DV+P + E+ E N VVQ + + ++++ E LP+ ++ S
Sbjct: 329 AEQENSADVAPPQPEEASNTE---NHPVVQDVMGEGMLRIAATRDWVSGESSLPVSKRLS 385
Query: 315 NNDREVQNETIKE 353
DR+ + E KE
Sbjct: 386 AKDRQDERERRKE 398
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 262 DFLSKIFEPQNLHCTTSLFFPSSTYS 185
D ++KIF+P L TT ++P TY+
Sbjct: 392 DMVNKIFKPSTLTSTTRNYYPRPTYA 417
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 262 DFLSKIFEPQNLHCTTSLFFPSSTYS 185
D ++KIF+P L TT ++P TY+
Sbjct: 472 DMVNKIFKPSTLTSTTRNYYPRPTYA 497
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 262 DFLSKIFEPQNLHCTTSLFFPSSTYS 185
D ++KIF+P L TT ++P TY+
Sbjct: 392 DMVNKIFKPSTLTSTTRNYYPRPTYA 417
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 262 DFLSKIFEPQNLHCTTSLFFPSSTYS 185
D ++KIF+P L TT ++P TY+
Sbjct: 392 DIVNKIFKPSTLTSTTRNYYPRPTYA 417
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 262 DFLSKIFEPQNLHCTTSLFFPSSTYS 185
D ++KIF+P L TT ++P TY+
Sbjct: 541 DMVNKIFKPSTLTSTTRNYYPRPTYA 566
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 294 PLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCD 446
P++ N ++ Q E + E + EN T IG +NH+ S CD
Sbjct: 462 PMVVTQQKNHKKTQAEEVDEKKNQENPNTDATIGAPSGGENHQNRSLISCD 512
>09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709
Length = 121
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 164 RYIIFHFSHYVLLINYFYTY 105
R IIFHF H L+IN F T+
Sbjct: 72 RAIIFHFHHINLVINTFNTF 91
>05_01_0406 +
3197189-3197389,3197491-3197628,3198463-3198544,
3198658-3198734,3198829-3198935,3199367-3199505,
3200602-3200718,3200850-3200941,3201096-3201162,
3201249-3201355,3201468-3201546,3201751-3201894,
3202095-3202235
Length = 496
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 229 LHCTTSLFFPSSTYSLCSVSIGDTSF 152
+HC TSL F S+T S S +I TSF
Sbjct: 337 VHCKTSLTFASTTGSFTSNAIMATSF 362
>04_03_0873 +
20455860-20456042,20456864-20457102,20457596-20457692,
20457816-20457857,20458060-20458186,20458879-20458991,
20459063-20459126,20459218-20459311,20459393-20459501,
20459803-20459859,20460064-20460126,20460158-20460195,
20460835-20461028,20461266-20461477
Length = 543
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -2
Query: 383 KCIHVLDMIKFLYSLVLYFSIVVTGLLHKWQIFL---LSDIIR*FLIQNFRTAKFALHYE 213
+C+ +L + L LY +I TG ++KW FL L ++ L Q F + KFA ++
Sbjct: 44 QCLGLLRALGLADRLTLYRAIRPTGGINKWLHFLPISLHKLVDQVLRQMFSSNKFATLFQ 103
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 474 LYHGTRLDPHHNLHNSN 424
L+HGTR++P L NSN
Sbjct: 689 LFHGTRVEPPSTLRNSN 705
>02_04_0560 -
23875475-23875573,23876005-23876125,23876409-23876485,
23876720-23876784,23877126-23877213,23878472-23878480
Length = 152
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -2
Query: 155 IFHFSHYV--LLINYFYTYNLKASSFVMEKINKLILMNLLG 39
+FH + V +NY++ + K VME++ +I+++LLG
Sbjct: 62 LFHMNSVVKKFHVNYWFYCSTKKVDKVMEEMKPIIILSLLG 102
>01_01_0420 +
3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 116 FYTYNLKASSFVMEKINKLILMNLLGNRLYG 24
+ +N SS +M+ ++ L ++NL GN L+G
Sbjct: 547 YNNFNGSISSCLMDSVSTLQVLNLKGNELHG 577
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = +3
Query: 153 NDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREV 332
ND SP+ E + + K+VV ++CG + K+ Y+A + Q+A DR
Sbjct: 867 ND-SPVMFNTCERKQSHQKKIVVAGRWCGKVWMSKQVHPYLAHRVE---SQEAEEADRIC 922
Query: 333 QNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCD 446
YH + + E +G + V+ K S + D
Sbjct: 923 S-------YHFDEKHKAEPVGNSSRVEASKRKSSSLTD 953
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,780
Number of Sequences: 37544
Number of extensions: 276735
Number of successful extensions: 640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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