Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_K18
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    97   1e-21
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    96   2e-21
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.2  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   8.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.1  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 97.1 bits (231), Expect = 1e-21
 Identities = 44/84 (52%), Positives = 50/84 (59%)
 Frame = +1

Query: 19  LPQGPSSFGQRRNHPHPXCXICGLSSXHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 198
           + +G  SFG R N  H  C  CG  S HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 199 XXXMRHLKIVRRRFRNGFKEGKPT 270
              M +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 95.9 bits (228), Expect = 2e-21
 Identities = 45/91 (49%), Positives = 51/91 (56%)
 Frame = +1

Query: 19  LPQGPSSFGQRRNHPHPXCXICGLSSXHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 198
           + +G  SFG R N  H  C  CG  S HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 199 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 291
              M +LK V R F+NGF+ GKP     A A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 227 TIFK*RMRPVPVVFLRLAFTDQW*XRNFAAGYPHWAHF 114
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/29 (37%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
 Frame = +1

Query: 61  PHPXCXICGLSSXHIQ-----KSKCAQCG 132
           PH  C  CG    HI        KC  CG
Sbjct: 103 PHVLCTTCGAIDDHISVRCPWTKKCMNCG 131


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 327 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 232
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,551
Number of Sequences: 5004
Number of extensions: 21357
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)