Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_K12
         (343 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5A4 Cluster: Pre-mRNA splicing factor RNA helicase, ...    33   1.7  
UniRef50_Q0RKB9 Cluster: Putative 3-(3-hydroxy-phenyl)propionate...    31   6.7  
UniRef50_Q3L0S2 Cluster: Putative host-specificity protein; n=4;...    31   6.7  
UniRef50_Q2QZH4 Cluster: NB-ARC domain containing protein; n=13;...    30   8.8  
UniRef50_Q23DP0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  

>UniRef50_Q8I5A4 Cluster: Pre-mRNA splicing factor RNA helicase,
            putative; n=1; Plasmodium falciparum 3D7|Rep: Pre-mRNA
            splicing factor RNA helicase, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 1168

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3    AGRLLHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVI--HNISETFCYD 158
            A  + +  KG  KEK A N    +I     +  LF N+YK    +N S +FCYD
Sbjct: 985  ANNIFYVQKG--KEKEAENIKKMFIIEGGGDFLLFLNIYKQCEENNFSTSFCYD 1036


>UniRef50_Q0RKB9 Cluster: Putative 3-(3-hydroxy-phenyl)propionate
           hydroxylase, FAD/NAD(P)- binding; n=1; Frankia alni
           ACN14a|Rep: Putative 3-(3-hydroxy-phenyl)propionate
           hydroxylase, FAD/NAD(P)- binding - Frankia alni (strain
           ACN14a)
          Length = 572

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 114 NYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVIGRP 1
           +Y + + YKP  +Y +G  L P  P K   V  + G+P
Sbjct: 375 DYILQMKYKPLPRYTEGAVLAPAAPDKGSPVGRMFGQP 412


>UniRef50_Q3L0S2 Cluster: Putative host-specificity protein; n=4;
           Lactobacillus phage Lc-Nu|Rep: Putative host-specificity
           protein - Lactobacillus rhamnosus Lc-Nu-like prophage
          Length = 989

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 33  VSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 155
           +S E  AT  ++F  F    NVT ++N     HNI  ++ Y
Sbjct: 847 ISAENAATKKYVFSTFKSTDNVTYYWNNTTAYHNIDFSWGY 887


>UniRef50_Q2QZH4 Cluster: NB-ARC domain containing protein; n=13;
           Oryza sativa|Rep: NB-ARC domain containing protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 1135

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 114 NYKIMLHYKPCKKYRKGMSL*P-FFPSKHLSVNEVIG 7
           N   M    PCKK +KGM++ P FF SK  ++  + G
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSKKSNLQTLAG 693


>UniRef50_Q23DP0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 700

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 63  FLFYIFYKACNVTLFYNLYKVIHNISETFCY-DCKLKCKF 179
           F  Y  Y   N    ++LY+ ++++ + F Y D K++CKF
Sbjct: 321 FSGYFIYSTLNHDKAFSLYEYLYSLDKPFIYSDRKVQCKF 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,040,060
Number of Sequences: 1657284
Number of extensions: 2659433
Number of successful extensions: 6165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6163
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)