Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_K07
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    32   0.089
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.5  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   5.8  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   5.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   7.7  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    26   7.7  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 111 ITSFAEAKGLDAINERMPPRRDGQRTPDTQEKKPHVNSN 227
           I SF +A+ LD  NER+PP    +R+ D +  +  +NS+
Sbjct: 496 INSFDDARKLDIQNERLPPSNSRRRSTDLKAFEEVMNSS 534


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 39   PWXALSGGKTSLKNALQGFS 98
            P   +SG KT LK AL+GF+
Sbjct: 1659 PQAVISGNKTQLKKALEGFN 1678


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 SLRSSLLFHIYSGIVKYVKKTQLLE 330
           S +SSL+F  Y GI++   K  +LE
Sbjct: 312 SSQSSLMFVFYEGIIRLFNKNNVLE 336


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 240 SATFYFSSILTFIPHLQWHS 299
           +A  +   ++TF+PH+QW S
Sbjct: 134 TAIAFVICVITFVPHIQWPS 153


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 526  YALLFKYCAALFNFFGNVILNFHMKRH---DIVM*INSDCLLILYIVIYFSEN*TCLKFS 696
            + LLF  CA + + + ++++  H + H     V+    D +L L + + FSEN   L FS
Sbjct: 1727 HKLLFPVCAEMLDMYASLVVEKHTRNHAAWQPVIATILDSILNLPLEL-FSENIHTLYFS 1785


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 252 YFSSILTFIPHLQWH 296
           +  SI +F+PH++WH
Sbjct: 28  FLQSINSFLPHVEWH 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,230
Number of Sequences: 5004
Number of extensions: 68402
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)