Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_K04
(682 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HPJ2 Cluster: MRNA transport regulator 3; n=1; Bombyx... 280 3e-74
UniRef50_Q1HQF7 Cluster: Exosomal 3'-5' exoribonuclease complex ... 189 6e-47
UniRef50_UPI0000D569CA Cluster: PREDICTED: similar to CG8025-PA;... 182 5e-45
UniRef50_A7RQ94 Cluster: Predicted protein; n=1; Nematostella ve... 158 1e-37
UniRef50_UPI00015B4338 Cluster: PREDICTED: similar to exosomal 3... 157 2e-37
UniRef50_Q6P0I8 Cluster: Exosome complex exonuclease MTR3; n=1; ... 129 7e-29
UniRef50_Q4T603 Cluster: Chromosome undetermined SCAF9013, whole... 118 1e-25
UniRef50_A0RXU1 Cluster: RNase PH; n=1; Cenarchaeum symbiosum|Re... 100 4e-20
UniRef50_Q55BB0 Cluster: Putative uncharacterized protein; n=1; ... 97 3e-19
UniRef50_A2RVK7 Cluster: At4g27490; n=7; Magnoliophyta|Rep: At4g... 97 5e-19
UniRef50_Q9SP08 Cluster: Exonuclease RRP41; n=5; Magnoliophyta|R... 96 8e-19
UniRef50_Q4P5R4 Cluster: Putative uncharacterized protein; n=1; ... 92 1e-17
UniRef50_A7DRS3 Cluster: Exosome complex exonuclease 1; n=1; Can... 92 1e-17
UniRef50_Q5RKV6 Cluster: Exosome complex exonuclease MTR3; n=9; ... 88 2e-16
UniRef50_Q9NPD3 Cluster: Exosome complex exonuclease RRP41; n=32... 87 3e-16
UniRef50_Q8PTT8 Cluster: Probable exosome complex exonuclease 1;... 85 1e-15
UniRef50_Q9P7R3 Cluster: Ribonuclease PH-like; n=1; Schizosaccha... 83 5e-15
UniRef50_Q9UXC2 Cluster: Probable exosome complex exonuclease 1;... 83 6e-15
UniRef50_Q9VW53 Cluster: CG8025-PA; n=3; Sophophora|Rep: CG8025-... 83 8e-15
UniRef50_Q5KA82 Cluster: Putative uncharacterized protein; n=1; ... 82 1e-14
UniRef50_Q6CA11 Cluster: Yarrowia lipolytica chromosome D of str... 81 2e-14
UniRef50_Q6L223 Cluster: Ribonuclease PH; n=2; Thermoplasmatales... 78 2e-13
UniRef50_Q54EU6 Cluster: Putative uncharacterized protein; n=1; ... 75 2e-12
UniRef50_Q17533 Cluster: Putative exosome complex exonuclease RR... 75 2e-12
UniRef50_Q01B24 Cluster: Ribonuclease PH; n=2; Ostreococcus|Rep:... 73 6e-12
UniRef50_A2DCK7 Cluster: 3' exoribonuclease family, domain 1 con... 73 9e-12
UniRef50_UPI00015B5B6C Cluster: PREDICTED: similar to ENSANGP000... 72 2e-11
UniRef50_UPI0000DB6F09 Cluster: PREDICTED: similar to putative e... 70 5e-11
UniRef50_Q4Q1B7 Cluster: Exosome complex exonuclease RRP41, puta... 70 6e-11
UniRef50_O42872 Cluster: Putative exosome complex exonuclease RR... 70 6e-11
UniRef50_UPI0000498B51 Cluster: exosome complex exonuclease; n=1... 68 2e-10
UniRef50_UPI0000E47A9B Cluster: PREDICTED: similar to exosome co... 67 4e-10
UniRef50_Q7SAL5 Cluster: Putative uncharacterized protein NCU080... 66 7e-10
UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome s... 60 1e-08
UniRef50_UPI0000F2E71E Cluster: PREDICTED: hypothetical protein;... 62 1e-08
UniRef50_Q5CWV7 Cluster: Archeo-eukaryotice exosomal RNAse PH; n... 61 3e-08
UniRef50_Q2UDE6 Cluster: Predicted protein; n=11; Pezizomycotina... 59 1e-07
UniRef50_Q4P9I6 Cluster: Putative uncharacterized protein; n=1; ... 57 3e-07
UniRef50_Q4Q0S3 Cluster: Exosome-associated protein 4, putative;... 57 5e-07
UniRef50_Q5KHU0 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_A1DFF4 Cluster: Exosome complex endonuclease 1/ribosoma... 56 8e-07
UniRef50_UPI00006CFE64 Cluster: 3'''' exoribonuclease family, do... 56 1e-06
UniRef50_UPI00005A29C6 Cluster: PREDICTED: similar to Exosome co... 56 1e-06
UniRef50_P46948 Cluster: Exosome complex exonuclease RRP41; n=7;... 56 1e-06
UniRef50_Q7Q0D9 Cluster: ENSANGP00000011759; n=2; Culicidae|Rep:... 54 3e-06
UniRef50_UPI0000498E66 Cluster: exosome complex exonuclease; n=1... 54 4e-06
UniRef50_Q01E66 Cluster: Putative exonuclease RRP41; n=1; Ostreo... 54 4e-06
UniRef50_Q5BZN7 Cluster: SJCHGC06185 protein; n=1; Schistosoma j... 53 6e-06
UniRef50_Q4T604 Cluster: Chromosome undetermined SCAF9013, whole... 53 7e-06
UniRef50_Q74NF6 Cluster: NEQ248; n=1; Nanoarchaeum equitans|Rep:... 53 7e-06
UniRef50_Q5CPV0 Cluster: Archeo-eukaryotic exosomal RNAse; n=2; ... 52 1e-05
UniRef50_Q5DB93 Cluster: SJCHGC05910 protein; n=1; Schistosoma j... 52 2e-05
UniRef50_A4R215 Cluster: Putative uncharacterized protein; n=7; ... 52 2e-05
UniRef50_Q8ILI7 Cluster: Exosome complex exonuclease rrp41, puta... 50 4e-05
UniRef50_Q6BY29 Cluster: Debaryomyces hansenii chromosome A of s... 50 4e-05
UniRef50_A7DRS4 Cluster: 3' exoribonuclease; n=1; Candidatus Nit... 50 4e-05
UniRef50_Q54Q83 Cluster: Putative uncharacterized protein; n=1; ... 49 9e-05
UniRef50_A0D7C7 Cluster: Chromosome undetermined scaffold_4, who... 48 2e-04
UniRef50_A7P578 Cluster: Chromosome chr4 scaffold_6, whole genom... 47 5e-04
UniRef50_A7AQY6 Cluster: Exosome complex exonuclease rrp41, puta... 44 0.003
UniRef50_A5KBP5 Cluster: Putative uncharacterized protein; n=3; ... 44 0.003
UniRef50_A5DL78 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A3H8A6 Cluster: 3' exoribonuclease; n=1; Caldivirga maq... 44 0.003
UniRef50_Q9YC05 Cluster: Probable exosome complex exonuclease 2;... 44 0.003
UniRef50_A5GII1 Cluster: Ribonuclease PH; n=3; Synechococcus|Rep... 44 0.005
UniRef50_Q6QN28 Cluster: Polynucleotide phosphorylase; n=3; Cand... 43 0.008
UniRef50_A0RXU0 Cluster: RNase PH-related exoribonuclease; n=1; ... 43 0.008
UniRef50_Q6C6V0 Cluster: Yarrowia lipolytica chromosome E of str... 42 0.018
UniRef50_Q6L224 Cluster: Ribonuclease PH; n=2; Thermoplasmatales... 42 0.018
UniRef50_Q01CT7 Cluster: Exosomal 3'-5' exoribonuclease complex,... 41 0.024
UniRef50_UPI0000519D97 Cluster: PREDICTED: similar to polyribonu... 41 0.032
UniRef50_Q2S1P1 Cluster: Polyribonucleotide nucleotidyltransfera... 40 0.074
UniRef50_Q96B26 Cluster: Exosome complex exonuclease RRP43; n=37... 40 0.074
UniRef50_Q8GZQ3 Cluster: Polynucleotide phosphorylase; n=10; cel... 39 0.098
UniRef50_Q10205 Cluster: Putative exosome complex exonuclease RR... 39 0.098
UniRef50_Q9ZAE1 Cluster: Polynucleotide phosphorylase; n=13; Bac... 38 0.17
UniRef50_Q4PHF3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.17
UniRef50_Q8TCS8 Cluster: Polyribonucleotide nucleotidyltransfera... 38 0.17
UniRef50_Q54CU6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_Q6CQR4 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 38 0.23
UniRef50_Q9UXC0 Cluster: Probable exosome complex exonuclease 2;... 38 0.23
UniRef50_P53256 Cluster: Exosome complex exonuclease RRP46; n=3;... 37 0.40
UniRef50_Q95Z09 Cluster: Rrp41p homologue; n=1; Trypanosoma bruc... 37 0.52
UniRef50_Q59LU3 Cluster: Potential exosome component Mtr3p; n=3;... 37 0.52
UniRef50_Q8TGX5 Cluster: Probable exosome complex exonuclease 2;... 36 0.69
UniRef50_Q74CS9 Cluster: Polyribonucleotide nucleotidyltransfera... 36 0.91
UniRef50_Q5DA97 Cluster: SJCHGC04772 protein; n=1; Schistosoma j... 36 0.91
UniRef50_Q7SEX2 Cluster: Putative uncharacterized protein NCU031... 36 0.91
UniRef50_Q4DJB2 Cluster: Ribosomal RNA processing protein 41B, p... 36 1.2
UniRef50_Q2H4W8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q7UR95 Cluster: Polyribonucleotide nucleotidyltransfera... 35 1.6
UniRef50_Q2NEX4 Cluster: Putative exosome complex, exonuclease 2... 35 1.6
UniRef50_UPI0000E45B97 Cluster: PREDICTED: similar to Exosome co... 35 2.1
UniRef50_UPI000051A59D Cluster: PREDICTED: similar to Exosome co... 35 2.1
UniRef50_Q64CA6 Cluster: TRNA nucleotidyltransferase; n=4; envir... 35 2.1
UniRef50_Q4DQX1 Cluster: ABC transporter, putative; n=3; Eukaryo... 34 2.8
UniRef50_Q29QQ9 Cluster: IP10364p; n=8; Endopterygota|Rep: IP103... 34 3.7
UniRef50_Q6CJI8 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 34 3.7
UniRef50_Q4N8R6 Cluster: Exosome complex exonuclease rrp41, puta... 33 4.9
UniRef50_Q5KWI5 Cluster: Ribonuclease PH; n=82; Bacteria|Rep: Ri... 33 4.9
UniRef50_Q7VAZ5 Cluster: Ribonuclease PH; n=37; Bacteria|Rep: Ri... 33 6.4
UniRef50_A4EC74 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
UniRef50_Q2QT85 Cluster: 3' exoribonuclease family, domain 1 con... 33 6.4
UniRef50_Q54VM4 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
UniRef50_Q29FV8 Cluster: GA17078-PA; n=1; Drosophila pseudoobscu... 33 6.4
UniRef50_A2FL81 Cluster: 3' exoribonuclease family, domain 1 con... 33 6.4
UniRef50_Q8SW95 Cluster: Putative uncharacterized protein ECU02_... 33 6.4
UniRef50_Q9SSE1 Cluster: MLP3.20 protein; n=5; core eudicotyledo... 33 8.5
>UniRef50_Q1HPJ2 Cluster: MRNA transport regulator 3; n=1; Bombyx
mori|Rep: MRNA transport regulator 3 - Bombyx mori (Silk
moth)
Length = 268
Score = 280 bits (686), Expect = 3e-74
Identities = 131/152 (86%), Positives = 134/152 (88%)
Frame = +2
Query: 227 ARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRR 406
ARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRR
Sbjct: 19 ARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRR 78
Query: 407 PYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXX 586
PYVPDVEEKALSVALRQALEPAVCRHFFP+YQIDVLIYILEHDGSC
Sbjct: 79 PYVPDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGLALAN 138
Query: 587 XXVPMFDIITSCSVAVIGNKMFIDPTEIXEHI 682
VPMFDIITSCSVAVIG++MFIDP EI EHI
Sbjct: 139 AAVPMFDIITSCSVAVIGHQMFIDPPEIEEHI 170
>UniRef50_Q1HQF7 Cluster: Exosomal 3'-5' exoribonuclease complex
subunit Rrp41-like protein; n=3; Culicidae|Rep: Exosomal
3'-5' exoribonuclease complex subunit Rrp41-like protein
- Aedes aegypti (Yellowfever mosquito)
Length = 307
Score = 189 bits (460), Expect = 6e-47
Identities = 88/200 (44%), Positives = 127/200 (63%)
Frame = +2
Query: 83 LXGPSXRVSXXISPXASLKTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGS 262
+ GP + I KT+ ++ ++ +GKRK GR+ NE+R F + +VS AKGS
Sbjct: 8 INGPEGSLPYQIFGKNRDKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGS 67
Query: 263 AYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALS 442
Y+EL TKV+ SVFDPREIP QN+FR LG+LYC+ KF+PF+C ++ P D EE++L+
Sbjct: 68 TYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQT-DAEERSLA 126
Query: 443 VALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSC 622
A+ +AL+P VCRH FPN+QID+ +LE DGS + MFDI+T+
Sbjct: 127 AAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTAS 186
Query: 623 SVAVIGNKMFIDPTEIXEHI 682
+VAVI +K+++DPT E +
Sbjct: 187 TVAVIEDKIYLDPTLAEERL 206
>UniRef50_UPI0000D569CA Cluster: PREDICTED: similar to CG8025-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG8025-PA
- Tribolium castaneum
Length = 282
Score = 182 bits (444), Expect = 5e-45
Identities = 84/194 (43%), Positives = 119/194 (61%)
Frame = +2
Query: 83 LXGPSXRVSXXISPXASLKTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGS 262
+ GP + + + K+ Q + NG R DGR E R +F +T +VSQAKGS
Sbjct: 8 INGPEISIPYQLFDKLNTKSLKTQFSEIVQPNGTRADGRTSTEHRKIFLKTGVVSQAKGS 67
Query: 263 AYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALS 442
AY+EL +TKV+ SVFDPREIP++ ++ G++YCE KFAPFSC KRR + D EE+ S
Sbjct: 68 AYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFAPFSC-HKRRLHQQDAEEQQFS 126
Query: 443 VALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSC 622
++QALE AV RH FPN+Q+D+ +L +DG+ +PM+D+ITS
Sbjct: 127 AIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSV 186
Query: 623 SVAVIGNKMFIDPT 664
++AV GN + +DPT
Sbjct: 187 TLAVQGNHLLVDPT 200
>UniRef50_A7RQ94 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 268
Score = 158 bits (384), Expect = 1e-37
Identities = 76/181 (41%), Positives = 109/181 (60%)
Frame = +2
Query: 137 KTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPR 316
K+ + + L ++G R+DGR +E R MF R +VSQAKGSAY+E++ TKV+C+++ PR
Sbjct: 20 KSKSNNNEPLIRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPR 79
Query: 317 EIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPN 496
E P + EF G+L CE KFAPFSC RR ++ D EEK S + QALEPAVC FP
Sbjct: 80 EAPRRQEFSMKGRLTCEFKFAPFSC-IYRRKHIQDAEEKENSYLVVQALEPAVCLEKFPK 138
Query: 497 YQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
Q+D+ I +LE+DGS + M D++++C++ N + +DP E
Sbjct: 139 AQVDIYITVLENDGSALSAGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEI 198
Query: 677 H 679
H
Sbjct: 199 H 199
>UniRef50_UPI00015B4338 Cluster: PREDICTED: similar to exosomal 3-5
exoribonuclease complex subunit Rrp41-like protein; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to exosomal
3-5 exoribonuclease complex subunit Rrp41-like protein -
Nasonia vitripennis
Length = 284
Score = 157 bits (381), Expect = 2e-37
Identities = 78/198 (39%), Positives = 114/198 (57%)
Frame = +2
Query: 83 LXGPSXRVSXXISPXASLKTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGS 262
+ GP V I + K +K E R D R+ E R MF + +VSQAKGS
Sbjct: 8 INGPESTVPYSIYVDLNAKPAKSSIK---NELKTRVDSRKHKELRKMFIKLGVVSQAKGS 64
Query: 263 AYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALS 442
AY+E+ +TKV+CS FDPREIP++ + G+++CE KFA F+ KR+ + D EEK S
Sbjct: 65 AYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFCEFKFASFA-TCKRKGHQQDTEEKEYS 123
Query: 443 VALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSC 622
+ +++ALEPAVCRH FPN+Q+DV +L++ GS VPMF I+T+
Sbjct: 124 LIMQRALEPAVCRHEFPNFQVDVYALVLDNGGSALGAAIMGASLALANASVPMFGIVTAV 183
Query: 623 SVAVIGNKMFIDPTEIXE 676
+ + + + +DPT+ E
Sbjct: 184 TAGIYDDLLLLDPTDKEE 201
>UniRef50_Q6P0I8 Cluster: Exosome complex exonuclease MTR3; n=1;
Danio rerio|Rep: Exosome complex exonuclease MTR3 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 271
Score = 129 bits (311), Expect = 7e-29
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF-RQLGQLY 361
R+ R + R +FAR +VSQAKGSAY+E TK++CSV+ P+E ++E + G+L
Sbjct: 33 RQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLV 92
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
C+ + APFSC KR ++ EE+ LS L ++L P VC H +P QIDV + +LE+DGS
Sbjct: 93 CDFRLAPFSCV-KRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151
Query: 542 CXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ M+DI+ C++ GN +DP+ E
Sbjct: 152 VLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEE 196
>UniRef50_Q4T603 Cluster: Chromosome undetermined SCAF9013, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF9013, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 276
Score = 118 bits (285), Expect = 1e-25
Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Frame = +2
Query: 179 GKRKDGRELNEA--RSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF-RQL 349
G R DGR+ +A R +F R + SQAKGSAY+E TK++C V+ PRE ++E +
Sbjct: 32 GPRADGRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRC 91
Query: 350 GQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILE 529
G+L +V+FAPFSCP +R ++ +++ S L ++L+PAVC H +P QI+V + +LE
Sbjct: 92 GRLTADVRFAPFSCP-ERGSWIQGSQDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLE 150
Query: 530 HDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ GS + M+D++ CS+ G DPT E
Sbjct: 151 NGGSVLAHAVTCASVALADAGIQMYDLVLGCSLRQDGASFVADPTYAEE 199
>UniRef50_A0RXU1 Cluster: RNase PH; n=1; Cenarchaeum symbiosum|Rep:
RNase PH - Cenarchaeum symbiosum
Length = 243
Score = 100 bits (239), Expect = 4e-20
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR 343
L ENG R DGR+++E R + +++ A GSAY+E K++ +F PR++ ++ R
Sbjct: 10 LLDENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVR 69
Query: 344 -QLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 520
+ G L C +PFS +++P P E +S +++ALEP++ FP +DV I
Sbjct: 70 TETGILRCRYHMSPFSVSERKKP-APSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIE 128
Query: 521 ILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+L+ DG +PM D++++C+ + + + +D
Sbjct: 129 VLQADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLD 174
>UniRef50_Q55BB0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 217
Score = 97.1 bits (231), Expect = 3e-19
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Frame = +2
Query: 239 MVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVP 418
+VSQ GS+YVE+ TKV+C++ PR + E + +L CE+K+ FS ++ YV
Sbjct: 5 VVSQGSGSSYVEMENTKVLCTIHGPRAT-QKTELFETAKLNCELKYTTFSSTTEKIDYVE 63
Query: 419 DVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVP 598
+ +EK LS+ + Q++ ++ +P ID+ I +L DG+ V
Sbjct: 64 NSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATMALADAGVE 123
Query: 599 MFDIITSCSVAVI-GNKMFIDPTEIXEHI 682
MFD+++SCSV+ N+ IDPT + E I
Sbjct: 124 MFDMVSSCSVSCTKDNRTLIDPTTLEETI 152
>UniRef50_A2RVK7 Cluster: At4g27490; n=7; Magnoliophyta|Rep:
At4g27490 - Arabidopsis thaliana (Mouse-ear cress)
Length = 256
Score = 96.7 bits (230), Expect = 5e-19
Identities = 54/159 (33%), Positives = 75/159 (47%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR ++ R +T VS A GSAY E TKV+ SVF PRE + +G+L C
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
V + F+ P + + K S L +ALE + FP +DV +LE GS
Sbjct: 94 NVSYTNFASPTLGQ----GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGSD 149
Query: 545 XXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDP 661
+ M+D+IT+ SV+ IG + IDP
Sbjct: 150 LSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDP 188
>UniRef50_Q9SP08 Cluster: Exonuclease RRP41; n=5; Magnoliophyta|Rep:
Exonuclease RRP41 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 241
Score = 95.9 bits (228), Expect = 8e-19
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ- 355
G R DGR NE R + A +VS+A GSA E+ TKV+ +V+ PREI ++++ ++
Sbjct: 8 GLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHA 67
Query: 356 -LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEH 532
+ CE A FS +RR D LS+ +RQ +E + P+ QID+ + +L+
Sbjct: 68 VVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 533 DGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
DG +PM D+ SCS + + +D
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLD 168
>UniRef50_Q4P5R4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 297
Score = 92.3 bits (219), Expect = 1e-17
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLY 361
+R D R ++ R +F +T +V A GS+YVE+ K+ CSVF PR++ + ++ +L
Sbjct: 37 QRPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQVKGR-QYSGKAELN 95
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG- 538
EVKFAPFS R+RRP E LS L QAL P++ P +D+ I +L+ DG
Sbjct: 96 VEVKFAPFSSRRRRRP-GKTTESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQTDGL 154
Query: 539 --SCXXXXXXXXXXXXXXXXVPMFDIITSCSVAV 634
SC + M+ ++ C V
Sbjct: 155 EESCIAAACIAATTALASAGIEMYGLVVGCVALV 188
>UniRef50_A7DRS3 Cluster: Exosome complex exonuclease 1; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Exosome
complex exonuclease 1 - Candidatus Nitrosopumilus
maritimus SCM1
Length = 244
Score = 92.3 bits (219), Expect = 1e-17
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI-PHQNEF 340
L ENGKR DGR ++E R + + + A GS+Y+E K++ VF PR++ P
Sbjct: 10 LMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSD 69
Query: 341 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 520
G L PFS ++ P P E +S +++ALEPAV FP +DV I
Sbjct: 70 TDTGILRVRYHMEPFSVGERKNP-APSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIE 128
Query: 521 ILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+L+ DG +PM D++ + + + + + +D
Sbjct: 129 VLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILD 174
>UniRef50_Q5RKV6 Cluster: Exosome complex exonuclease MTR3; n=9;
Tetrapoda|Rep: Exosome complex exonuclease MTR3 - Homo
sapiens (Human)
Length = 272
Score = 88.2 bits (209), Expect = 2e-16
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Frame = +2
Query: 164 LYXENGKRKDG-RELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPH---- 328
LY + + G R+ R ++AR ++SQAKGSAY+E TKV+C+V PR+
Sbjct: 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERG 78
Query: 329 --------QNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRH 484
+ G+L C+ + APF+ R+R P EE+ L++AL++ALEPAV
Sbjct: 79 GGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAP-PGGCEERELALALQEALEPAVRLG 137
Query: 485 FFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI---GNKMFI 655
+P Q++V +LE GS V M+D++ C +++ +
Sbjct: 138 RYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLL 197
Query: 656 DPTEIXE 676
DPT + E
Sbjct: 198 DPTRLEE 204
>UniRef50_Q9NPD3 Cluster: Exosome complex exonuclease RRP41; n=32;
Eumetazoa|Rep: Exosome complex exonuclease RRP41 - Homo
sapiens (Human)
Length = 245
Score = 87.4 bits (207), Expect = 3e-16
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQNE 337
L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65
Query: 338 FRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVL 514
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 66 LPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 124
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ +L+ DG +PM D + +CS + D + + E
Sbjct: 125 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>UniRef50_Q8PTT8 Cluster: Probable exosome complex exonuclease 1;
n=23; Archaea|Rep: Probable exosome complex exonuclease
1 - Methanosarcina mazei (Methanosarcina frisia)
Length = 493
Score = 85.4 bits (202), Expect = 1e-15
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI-PHQNEF 340
L ++G R DGR +E R M ++S+A GS Y+E + K++ VF PRE P +++
Sbjct: 10 LITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQR 69
Query: 341 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 520
+ A FS + RP P +S R+A EP + FP ID+ +
Sbjct: 70 ADSAVIRYRYNMASFSVEDRARP-GPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128
Query: 521 ILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+L+ D +PM +ITSC+ + K+ +D
Sbjct: 129 VLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLD 174
>UniRef50_Q9P7R3 Cluster: Ribonuclease PH-like; n=1;
Schizosaccharomyces pombe|Rep: Ribonuclease PH-like -
Schizosaccharomyces pombe (Fission yeast)
Length = 257
Score = 83.4 bits (197), Expect = 5e-15
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Frame = +2
Query: 197 RELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN-EFRQLGQLYCEVK 373
R+++ R ++ + ++A GS+Y E K K+ C+V PR P + FR +L CE +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPR--PSKTFAFRSSAKLNCEFR 87
Query: 374 FAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXX 553
+PFS R+ +V VEEK+ S + A+ P++ H +P IDV I ++E DG+
Sbjct: 88 LSPFSTS-VRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATL 146
Query: 554 XXXX--XXXXXXXXXVPMFDIITSCSVAVIGN--KMFIDPTEIXE 676
+ D++T SV N + +IDP + E
Sbjct: 147 AAAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDE 191
>UniRef50_Q9UXC2 Cluster: Probable exosome complex exonuclease 1;
n=16; Archaea|Rep: Probable exosome complex exonuclease
1 - Sulfolobus solfataricus
Length = 248
Score = 83.0 bits (196), Expect = 6e-15
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 1/169 (0%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI-PHQNEF 340
L ++GKR DGR+ +E RS+ ++ A GSA E+ TK + +V+ P+E+ P
Sbjct: 12 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSL 71
Query: 341 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 520
L PFS ++ P P E LS +R+ALE AV FP IDV
Sbjct: 72 PDRAVLRVRYHMTPFSTDERKNP-APSRREIELSKVIREALESAVLVELFPRTAIDVFTE 130
Query: 521 ILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTE 667
IL+ D +PM D+I +V + +D E
Sbjct: 131 ILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNE 179
>UniRef50_Q9VW53 Cluster: CG8025-PA; n=3; Sophophora|Rep: CG8025-PA
- Drosophila melanogaster (Fruit fly)
Length = 326
Score = 82.6 bits (195), Expect = 8e-15
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Frame = +2
Query: 215 RSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQ-LGQLYCEVKFAPFSC 391
R+ F R +++ +GSAY+E TKV+ V P+E+ + R +G L C V FA FS
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFST 107
Query: 392 PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXX 571
VP+ E+ LS L +A+EP VCR F N+Q+D+ + IL+ DG
Sbjct: 108 GDLDS--VPE-RERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCG 164
Query: 572 XXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXEHI 682
+ +D+IT+ + + + +F++P+ E +
Sbjct: 165 VALVECGISTYDLITASTACIYRDHVFLNPSAKVEEL 201
>UniRef50_Q5KA82 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 268
Score = 81.8 bits (193), Expect = 1e-14
Identities = 45/109 (41%), Positives = 60/109 (55%)
Frame = +2
Query: 209 EARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFS 388
E+R +F +T ++SQA GS Y+E K+ CSV+ PR P + G L EVKFAPF+
Sbjct: 41 ESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPR--PKPPPYSPQGTLNLEVKFAPFA 98
Query: 389 CPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 535
+R P + D E LS L Q L P + H P IDV + +LE D
Sbjct: 99 SDPRRAP-LRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLESD 146
>UniRef50_Q6CA11 Cluster: Yarrowia lipolytica chromosome D of strain
CLIB122 of Yarrowia lipolytica; n=6;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome D
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 287
Score = 81.4 bits (192), Expect = 2e-14
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 1/172 (0%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDM-VSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF 340
+Y G R DGR NE R+ + + + A GS+YVE TKVVC+V PRE ++
Sbjct: 52 IYSPEGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNT 111
Query: 341 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 520
+ V A FS + + D +++ +RQ LE AV P QI V I
Sbjct: 112 TDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNIT 171
Query: 521 ILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
++ DG VP+ D +++CS V N ID + E
Sbjct: 172 VIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNALIDLNTLEE 223
>UniRef50_Q6L223 Cluster: Ribonuclease PH; n=2;
Thermoplasmatales|Rep: Ribonuclease PH - Picrophilus
torridus
Length = 239
Score = 77.8 bits (183), Expect = 2e-13
Identities = 47/165 (28%), Positives = 70/165 (42%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR 343
L ++G R DGR NE R + T +V A GSAY+E K+V +V+ P +
Sbjct: 6 LINDDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNI 65
Query: 344 QLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYI 523
+ A FS ++RP PD +S + +ALE A+ P +IDV I +
Sbjct: 66 DKAIVKARYNMAGFSVEERKRP-GPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEV 124
Query: 524 LEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
LE D +PM D+ C+ K+ +D
Sbjct: 125 LEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLD 169
>UniRef50_Q54EU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 247
Score = 74.9 bits (176), Expect = 2e-12
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 3/169 (1%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNE-FRQLGQ 355
G R DGR NE R + + +A GSAY E TK++ +V+ PREI +
Sbjct: 11 GLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAV 70
Query: 356 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVA--LRQALEPAVCRHFFPNYQIDVLIYILE 529
+ CE + FS ++ + +A ++QA E + H +P QI++ + +L+
Sbjct: 71 VKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQ 130
Query: 530 HDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
DG + M D I +CS + I +D I E
Sbjct: 131 SDGGLKAAAINASTLALIDAGISMKDFICACSTSCIDGIAVLDLNNIEE 179
>UniRef50_Q17533 Cluster: Putative exosome complex exonuclease
RRP41; n=2; Caenorhabditis|Rep: Putative exosome complex
exonuclease RRP41 - Caenorhabditis elegans
Length = 240
Score = 74.5 bits (175), Expect = 2e-12
Identities = 43/171 (25%), Positives = 73/171 (42%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR 343
+ E+G R DGR + R++ R + A+GS Y+E TKV+C+V+ P E
Sbjct: 3 IISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIE 62
Query: 344 QLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYI 523
+ C+ FS ++ D + +S L +A E + FP Q+D+ +
Sbjct: 63 DKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEV 122
Query: 524 LEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
++ DGS +PM I ++ + V+ K +D T E
Sbjct: 123 IQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREE 173
>UniRef50_Q01B24 Cluster: Ribonuclease PH; n=2; Ostreococcus|Rep:
Ribonuclease PH - Ostreococcus tauri
Length = 693
Score = 72.9 bits (171), Expect = 6e-12
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Frame = +2
Query: 185 RKDGRELNE-ARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLY 361
R DGR +E R++ D S+A GS+YVEL TKV C+V+ PR + G +
Sbjct: 461 RSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVID 520
Query: 362 CEVKFAPFSCPRKRRPYVP---------DVEEKA----LSVALRQALEPAVCRHFFPNYQ 502
+V PF+ RKR +V D+ A LS + L FP Q
Sbjct: 521 VDVFRVPFA--RKRAIHVERGRENEREKDLNRSAADVELSARIADVLRACALTETFPRAQ 578
Query: 503 IDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTE 667
+DV + I++ DG V M D+ ++C + IG ++ +DPTE
Sbjct: 579 VDVYVTIMDSDGGEVVASVLAASAALARAGVEMADLASACELVRIGERLVLDPTE 633
>UniRef50_A2DCK7 Cluster: 3' exoribonuclease family, domain 1
containing protein; n=1; Trichomonas vaginalis G3|Rep:
3' exoribonuclease family, domain 1 containing protein -
Trichomonas vaginalis G3
Length = 241
Score = 72.5 bits (170), Expect = 9e-12
Identities = 40/160 (25%), Positives = 74/160 (46%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQL 358
G R DGR NE R + A+ + GS++ ++ +T+V+ +F PR+ ++
Sbjct: 9 GLRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD---NRSGDNAAEI 65
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG 538
++A F+ + V +++ E A+ R FP+ +I + I +++ DG
Sbjct: 66 RVTFEYADFAKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQDDG 125
Query: 539 SCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
SC +PMFD + S +VA+ +K F+D
Sbjct: 126 SCQSAAINAATLALIDAGIPMFDFVVSMTVALYDDKCFLD 165
>UniRef50_UPI00015B5B6C Cluster: PREDICTED: similar to
ENSANGP00000009222; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000009222 - Nasonia
vitripennis
Length = 270
Score = 71.7 bits (168), Expect = 2e-11
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVF---DPREIPHQNEFR 343
+ G R DGR E R + R + QA GSAY+E KTK++ +V+ PR + N +
Sbjct: 9 QGGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALK 68
Query: 344 QL-GQLYCEVKFAPFSC---PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDV 511
+ G + C+ A FS RK++P D + + S LR A+E + F QID+
Sbjct: 69 AVKGIVNCQYSTAVFSFGAGERKKKPR-GDRKSQERSQQLRHAMEAIINLELFARSQIDI 127
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGN 643
+ +L+ DGS +P+ D CSV V N
Sbjct: 128 FVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDN 171
>UniRef50_UPI0000DB6F09 Cluster: PREDICTED: similar to putative
exosome complex exonuclease RRP41; n=1; Apis
mellifera|Rep: PREDICTED: similar to putative exosome
complex exonuclease RRP41 - Apis mellifera
Length = 268
Score = 70.1 bits (164), Expect = 5e-11
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Frame = +2
Query: 152 QLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQ 331
+++ + +NG R DGR E R + + + QA GSAY+E TK++ +V+ P + P
Sbjct: 3 EVENIEDQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQ-PRN 61
Query: 332 NEFRQL-----GQLYCEVKFAPFSC---PRKRRPYVPDVEEKALSVALRQALEPAVCRHF 487
+ R G + C+ A FS RKR+P D + + S+ L+ A+E +
Sbjct: 62 STGRSTSKITKGIVNCQYSMAVFSLSSGERKRKPR-GDRKSQERSLQLKHAMEAIIHLEL 120
Query: 488 FPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+P QID+ + L+ DGS +P+ + C+V +I
Sbjct: 121 YPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLI 170
>UniRef50_Q4Q1B7 Cluster: Exosome complex exonuclease RRP41,
putative; n=7; Trypanosomatidae|Rep: Exosome complex
exonuclease RRP41, putative - Leishmania major
Length = 246
Score = 69.7 bits (163), Expect = 6e-11
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR-QLGQ 355
G R DGR EAR M +S GS + L ++KV VF PRE H+ E + G
Sbjct: 12 GLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGL 71
Query: 356 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 535
+ CEV A F+ +R P + + A+ Q + +PN QI + I +L+ D
Sbjct: 72 VTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQD 131
Query: 536 GSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPT 664
G+ V M D + ++ M ID T
Sbjct: 132 GNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLT 174
>UniRef50_O42872 Cluster: Putative exosome complex exonuclease
RRP41; n=1; Schizosaccharomyces pombe|Rep: Putative
exosome complex exonuclease RRP41 - Schizosaccharomyces
pombe (Fission yeast)
Length = 242
Score = 69.7 bits (163), Expect = 6e-11
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR-QLGQ 355
G R DGR +E R+ R + GSA++EL TKV+C V P E +++ R
Sbjct: 11 GLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTF 70
Query: 356 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 535
+ E+ A FS ++ + D + +AL+ E + +P QI V +++L+ D
Sbjct: 71 VNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDD 130
Query: 536 GSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
G+ +P+ D + + ++ + M +D + E
Sbjct: 131 GAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEE 177
>UniRef50_UPI0000498B51 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 238
Score = 68.1 bits (159), Expect = 2e-10
Identities = 47/168 (27%), Positives = 70/168 (41%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQL 358
G R DGR E R + +S A GSA V + T V VF P E +N R+ +L
Sbjct: 8 GYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRN--REGAEL 65
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG 538
A F+ RKRR + D + L+Q E + P ID+ + +++ DG
Sbjct: 66 MVSYSQATFAT-RKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDG 124
Query: 539 SCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXEHI 682
S +PM DI+ + I KM +D + E++
Sbjct: 125 SVTAAVINACTLALIDAGIPMIDIVAAAEGGYIDGKMVVDMNKDEENV 172
>UniRef50_UPI0000E47A9B Cluster: PREDICTED: similar to exosome
component 6, partial; n=3; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to exosome component
6, partial - Strongylocentrotus purpuratus
Length = 203
Score = 66.9 bits (156), Expect = 4e-10
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +2
Query: 242 VSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRK 400
VSQAKGS Y+E++ TKV+C+V+ PRE+P ++ F GQL CE KFA F+ K
Sbjct: 6 VSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFIINGQLRCEFKFATFASEHK 58
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Frame = +2
Query: 350 GQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV--CRHFFPNYQIDVLIYI 523
G Y E+K C VP + ++ LR + A H P Q+D+ I +
Sbjct: 11 GSCYMEMKNTKVICAVYGPREVPRRDGFIINGQLRCEFKFATFASEHKIPKSQVDIFITV 70
Query: 524 LEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
LE+DGS + M+D++ S+ G + +DPT E
Sbjct: 71 LENDGSVLSAAITCASIAVANAGIEMYDLVIGSSLRQTGETLLLDPTAFDE 121
>UniRef50_Q7SAL5 Cluster: Putative uncharacterized protein
NCU08026.1; n=3; Sordariomycetes|Rep: Putative
uncharacterized protein NCU08026.1 - Neurospora crassa
Length = 286
Score = 66.1 bits (154), Expect = 7e-10
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKT-------KVVCSVFDPREIPHQ 331
E K R N R M+ +T + A GSAY+E+ + K+ CSV PR +P
Sbjct: 28 EGFKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRS 87
Query: 332 NEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDV 511
F L VKFAPF+ ++RR Y+ D E+ L L AL ++ +P +D+
Sbjct: 88 TPFSPHIILSTHVKFAPFA-TKQRRGYIRDPIERDLGTHLETALRGSIIADRWPKSGVDI 146
Query: 512 LIYILE 529
+I I+E
Sbjct: 147 IISIVE 152
>UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
SCAF14556, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 291
Score = 60.1 bits (139), Expect(2) = 1e-08
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI------- 322
L + G R DGR+ E R + AR + +QA GSAY+E TK + V+ P E+
Sbjct: 6 LLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVC 65
Query: 323 ----------PHQNEFRQLGQLYCEVKFAPFS-CPRKRRPYVPDVEEKALSVALRQALEP 469
+ C+ A FS RKRRP+ D + +S+ L+Q E
Sbjct: 66 VCVCVCQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPH-GDRKSTEMSLHLKQTFEA 124
Query: 470 AVCRHFFPNYQIDVLIYI 523
AV FP QID+ + +
Sbjct: 125 AVMTQLFPRSQIDIYVKV 142
Score = 22.2 bits (45), Expect(2) = 1e-08
Identities = 10/48 (20%), Positives = 17/48 (35%)
Frame = +2
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+ IL+ DG +PM D + +C+V + D
Sbjct: 171 LQILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLAD 218
>UniRef50_UPI0000F2E71E Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 337
Score = 62.1 bits (144), Expect = 1e-08
Identities = 30/91 (32%), Positives = 48/91 (52%)
Frame = +2
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
C+ + APFS +RRP EEK LS+AL++AL PAV +P Q++V +L+ GS
Sbjct: 113 CDFRRAPFSSRGRRRPPSGSSEEKELSLALQEALGPAVQLQRYPRAQVEVSALLLQDGGS 172
Query: 542 CXXXXXXXXXXXXXXXXVPMFDIITSCSVAV 634
+ M+DI+ +C +++
Sbjct: 173 ALAAGVTAAGLALADAGIEMYDIVVACGLSL 203
>UniRef50_Q5CWV7 Cluster: Archeo-eukaryotice exosomal RNAse PH; n=3;
Cryptosporidium|Rep: Archeo-eukaryotice exosomal RNAse
PH - Cryptosporidium parvum Iowa II
Length = 303
Score = 60.9 bits (141), Expect = 3e-08
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R D R+ E R + RT ++ A GSAY + TKV+C ++ P + QN +
Sbjct: 47 RNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGP-NLCKQNPIEDGLSVSV 105
Query: 365 EVKFAPF---SCPRKRRPYVPDVE----EKALSVALRQALEPAVCRHFFPNYQIDVLIYI 523
E F S K + ++E EK S+ L + + +C + ID YI
Sbjct: 106 EYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSIDCYFYI 165
Query: 524 LEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCS-VAVIGNKMF 652
++ DGS + + + ++ + +AV N +F
Sbjct: 166 IDDDGSAFSAAISAACLSLCNAKIEIIGLFSATNIIAVNSNSLF 209
>UniRef50_Q2UDE6 Cluster: Predicted protein; n=11;
Pezizomycotina|Rep: Predicted protein - Aspergillus
oryzae
Length = 324
Score = 58.8 bits (136), Expect = 1e-07
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKT--------------------KVVC 298
G+ + R+ NE R +F +T ++ A GSAY+E + K+ C
Sbjct: 32 GRPQRQRQPNELRKIFLKTGLIPSASGSAYLEYEPSASLAAARSSPKSLIPPSSALKLAC 91
Query: 299 SVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVC 478
+V P+ +P F L +K+APF+ RKR+ ++ D E+ L V L AL +
Sbjct: 92 TVHGPKPLPRSATFSPNLVLTTHIKYAPFAA-RKRKGHIRDASERDLGVHLETALRGVIV 150
Query: 479 RHFFPNYQIDVLIYILE 529
+P +D+ I ILE
Sbjct: 151 AERWPKSGLDITITILE 167
>UniRef50_Q4P9I6 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 273
Score = 57.2 bits (132), Expect = 3e-07
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 3/174 (1%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFART--DMVSQAKGSAYVELRKTKVVCSVFDPREIPH-QN 334
L G R DGR+ E RS+ + + A G A + T V +VF PRE N
Sbjct: 6 LLNAGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGAN 65
Query: 335 EFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVL 514
+ EV AP+ +RR D + +++ EP + H +P QID+
Sbjct: 66 VMHDRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIF 125
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ + + DG + M D + S S + +D + E
Sbjct: 126 VQVHQQDGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNTEE 179
>UniRef50_Q4Q0S3 Cluster: Exosome-associated protein 4, putative;
n=7; Trypanosomatidae|Rep: Exosome-associated protein 4,
putative - Leishmania major
Length = 221
Score = 56.8 bits (131), Expect = 5e-07
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 KRKDGRELNEA-RSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQL 358
KR DGRE A R++ T++++ SA VE+ KT+V+C V P+ + + + G++
Sbjct: 2 KRADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGVRPPQHLVQEYRGTR-GRV 60
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG 538
C+V + S + + ++ +++AL E AV P + VLI ++ DG
Sbjct: 61 SCQVHRSLASSSN-----LDNSGDRDMALALEGVAEQAVVLERIPQLLVGVLIEVVHDDG 115
Query: 539 SCXXXXXXXXXXXXXXXXVPMFDIITSCSVAV 634
+ V ++D ++CS A+
Sbjct: 116 ALWDAATTALCVALTAGGVEVYDTFSACSAAL 147
>UniRef50_Q5KHU0 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 262
Score = 56.0 bits (129), Expect = 8e-07
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN-EFRQL 349
+ G R+D R E RS + S + GS+ T V SVF PRE ++
Sbjct: 11 DGGLRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDR 70
Query: 350 GQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILE 529
+ EV P++ R D + + A+RQ EP + H +P +I + + +L
Sbjct: 71 AVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLS 130
Query: 530 HDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAV 634
DG + + D ++S S+ +
Sbjct: 131 ADGGILPTSINATTLALIDAGIALLDYVSSISIGL 165
>UniRef50_A1DFF4 Cluster: Exosome complex endonuclease 1/ribosomal
RNA processing protein, putative; n=9;
Eurotiomycetidae|Rep: Exosome complex endonuclease
1/ribosomal RNA processing protein, putative -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 269
Score = 56.0 bits (129), Expect = 8e-07
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR----QLG 352
R DGR NE R + A+ + GS+++ + T ++CSV P E + G
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAG 74
Query: 353 QLY-CEVKFAPFS-CPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYIL 526
+ +V A F+ R+RR D + ++ LR A + + H +P+ I + + +L
Sbjct: 75 AVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 527 EHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGN 643
DGS +PM ++++C+ + G+
Sbjct: 135 SADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGS 173
>UniRef50_UPI00006CFE64 Cluster: 3'''' exoribonuclease family,
domain 1 containing protein; n=1; Tetrahymena
thermophila SB210|Rep: 3'''' exoribonuclease family,
domain 1 containing protein - Tetrahymena thermophila
SB210
Length = 240
Score = 55.6 bits (128), Expect = 1e-06
Identities = 37/160 (23%), Positives = 68/160 (42%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R+DGR+ NE R + +GS + T++VC + P + E G L
Sbjct: 12 REDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHNKSTRRESE--GFLNV 69
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
+ APFS +R+ D + + LR + E + + +ID+++ +++ DGS
Sbjct: 70 QYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQADGSA 129
Query: 545 XXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPT 664
+PM D S +V + +++ +D T
Sbjct: 130 KSSIFNAISLALMDAGIPMKDFTVSSTVISLNSEILLDAT 169
>UniRef50_UPI00005A29C6 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP41 (Ribosomal RNA processing
protein 41) (Exosome component 4) (p12A) isoform 3; n=1;
Canis lupus familiaris|Rep: PREDICTED: similar to
Exosome complex exonuclease RRP41 (Ribosomal RNA
processing protein 41) (Exosome component 4) (p12A)
isoform 3 - Canis familiaris
Length = 226
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 362 CEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG 538
C+ A FS RKRRP+ D + + + LRQ E A+ P QID+ + +L+ DG
Sbjct: 55 CQYSSATFSTGERKRRPH-GDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 113
Query: 539 SCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+PM D + +CS + N D + + E
Sbjct: 114 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEE 159
>UniRef50_P46948 Cluster: Exosome complex exonuclease RRP41; n=7;
Saccharomycetales|Rep: Exosome complex exonuclease RRP41
- Saccharomyces cerevisiae (Baker's yeast)
Length = 246
Score = 55.6 bits (128), Expect = 1e-06
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 3/175 (1%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAK-GSAYVELRKTKVVCSVFDPREIPHQNEF 340
+Y G R DGR NE R + + A GS+Y+E K++ V P+E +++
Sbjct: 6 IYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQM 65
Query: 341 -RQLGQLYCEVKFAPFS-CPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVL 514
L V FS R + + + + +L + E V + +P ID+
Sbjct: 66 DTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIE 125
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXEH 679
I++LE DG + MFD I+ SV + +D + E+
Sbjct: 126 IHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>UniRef50_Q7Q0D9 Cluster: ENSANGP00000011759; n=2; Culicidae|Rep:
ENSANGP00000011759 - Anopheles gambiae str. PEST
Length = 274
Score = 54.0 bits (124), Expect = 3e-06
Identities = 37/104 (35%), Positives = 49/104 (47%)
Frame = +2
Query: 167 YXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQ 346
Y EN R DGREL E R + D++ A GSA V++ T VVC + P+ R
Sbjct: 18 YLENNIRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVVCGIKAELATPNALAPRH 77
Query: 347 LGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVC 478
G L V +P S P RP P E + S ++ A+ A C
Sbjct: 78 -GFLVPNVDLSPVSSP-SYRPGPPCDEAQVYSQSVADAISNARC 119
>UniRef50_UPI0000498E66 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 227
Score = 53.6 bits (123), Expect = 4e-06
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 2/167 (1%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLY 361
KR DGRE NE R+ + ++S AKGS ++ +KV+ SV +I Q+E +
Sbjct: 6 KRGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV----QIKTQDESIDF-EFT 60
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
+V FA F + +E L L Q+L + + I + ++++E DGS
Sbjct: 61 VKVTFAQFG----NNDLLNKRKEVELQEILTQSLVSRINQESNKGKIICLQVFVMEQDGS 116
Query: 542 CXXXXXXXXXXXXXXXXVPMFDIITSCSVA--VIGNKMFIDPTEIXE 676
+ M II + +V I N++ +DPT + E
Sbjct: 117 VEDSIINSSSLALFDSEIQMDSIIIATTVVKLPIYNQVIVDPTALEE 163
>UniRef50_Q01E66 Cluster: Putative exonuclease RRP41; n=1;
Ostreococcus tauri|Rep: Putative exonuclease RRP41 -
Ostreococcus tauri
Length = 321
Score = 53.6 bits (123), Expect = 4e-06
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 3/180 (1%)
Frame = +2
Query: 128 ASLKTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVF 307
AS+K G R DGR NE R + +Q GSA EL T + C V
Sbjct: 42 ASVKRVERATMEYVSFEGLRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVD 101
Query: 308 DPREIPH---QNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVC 478
P E + + L C + F+ + D K L +AL AVC
Sbjct: 102 GPSERKFGGAEEGASEACALTCSHGRSAFASDGVQAGRKGDGRSKQFESVLAKALTSAVC 161
Query: 479 RHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
P ++ V +L DG +P+ II SC+V + + ID
Sbjct: 162 VDLMPRCEVQVRTTVLCDDGGARAASACAAVLALADAGIPLKGIIGSCTVGHLDGEALID 221
>UniRef50_Q5BZN7 Cluster: SJCHGC06185 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06185 protein - Schistosoma
japonicum (Blood fluke)
Length = 251
Score = 53.2 bits (122), Expect = 6e-06
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 3/170 (1%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ- 355
G+R DGR NE R + + + G ++ TKV+ SV P + + G
Sbjct: 1 GRRVDGRRPNELRRVHCQFGS-GNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGAT 59
Query: 356 LYCEVKFAPFSCPRKRRPYVPDVEEKA--LSVALRQALEPAVCRHFFPNYQIDVLIYILE 529
+ C+ PF+ R V + A S A+ + V +P QID+ + +++
Sbjct: 60 IICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119
Query: 530 HDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXEH 679
DGS + M ++++ +V + G+++F D E+
Sbjct: 120 SDGSEFACAVNATTLALTDAGIEMHYLVSAATVGLWGSRVFADLCRFEEN 169
>UniRef50_Q4T604 Cluster: Chromosome undetermined SCAF9013, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF9013,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 260
Score = 52.8 bits (121), Expect = 7e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 179 GKRKDGRELNEA--RSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNE 337
G R DGR+ +A R +F R + SQAKGSAY+E TK++C V+ PRE ++E
Sbjct: 32 GPRADGRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDE 86
>UniRef50_Q74NF6 Cluster: NEQ248; n=1; Nanoarchaeum equitans|Rep:
NEQ248 - Nanoarchaeum equitans
Length = 233
Score = 52.8 bits (121), Expect = 7e-06
Identities = 38/158 (24%), Positives = 66/158 (41%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR+ NE R + ++S+A GSAY T + +V+ R+ L
Sbjct: 2 RFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVY-------LKPGREQSNLKV 54
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
+ PF+ +R+ E LS + +ALEPA+ P I+ + I++ D
Sbjct: 55 SYRMLPFA-GEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAGT 113
Query: 545 XXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+PM ++ + +V +G K+ +D
Sbjct: 114 RVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLD 151
>UniRef50_Q5CPV0 Cluster: Archeo-eukaryotic exosomal RNAse; n=2;
Cryptosporidium|Rep: Archeo-eukaryotic exosomal RNAse -
Cryptosporidium parvum Iowa II
Length = 351
Score = 52.0 bits (119), Expect = 1e-05
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 6/178 (3%)
Frame = +2
Query: 152 QLKALYXENGKRKDGRELNEARSMFARTDMVSQA---KGSAYVELRKTKVVCSVFDPREI 322
++ + ++G R+DGR+L E R + + +Q G+ Y E + K++ S+ P I
Sbjct: 88 KMNEIVNKHGIRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPI 147
Query: 323 PHQNEFRQLG---QLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFP 493
+ Q+ C + +PFS +R+ D + + + +C +
Sbjct: 148 SGNINYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVICDQYSK 207
Query: 494 NYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTE 667
+ QI + I ILE DGS + M D+I S + + G ++ D T+
Sbjct: 208 S-QIIINIIILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQVLYDLTQ 264
>UniRef50_Q5DB93 Cluster: SJCHGC05910 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05910 protein - Schistosoma
japonicum (Blood fluke)
Length = 240
Score = 51.6 bits (118), Expect = 2e-05
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Frame = +2
Query: 257 GSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKA 436
GSAY+E+ + KV CSV P E+ RQ QL +KFAPF + + E+
Sbjct: 46 GSAYLEMGEIKVACSVNGPTEM------RQDSQLVTMLKFAPFLSWLPKD--IQASMERK 97
Query: 437 LSVALRQALEPAVCRHFFPNYQIDVLIYILE---HD-----GSCXXXXXXXXXXXXXXXX 592
LS L A+EPA+ H FP + +++ IL+ H+ G C
Sbjct: 98 LSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCLAAAITCAGLALLNSG 157
Query: 593 VPMFDIITSCSV 628
V M+D++ ++
Sbjct: 158 VQMYDLLVGLNL 169
>UniRef50_A4R215 Cluster: Putative uncharacterized protein; n=7;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 280
Score = 51.6 bits (118), Expect = 2e-05
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 17/164 (10%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPRE-IPHQNEF------- 340
R DGR NE R A+ + A GS+Y+E+ TKV+C V P E P Q
Sbjct: 14 RVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITAT 73
Query: 341 ---------RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFP 493
+ ++ + A FS +++ D + L + AL + H F
Sbjct: 74 ATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQ 133
Query: 494 NYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCS 625
+ I +++L DGS +PM D + +CS
Sbjct: 134 HSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACS 177
>UniRef50_Q8ILI7 Cluster: Exosome complex exonuclease rrp41,
putative; n=5; Plasmodium|Rep: Exosome complex
exonuclease rrp41, putative - Plasmodium falciparum
(isolate 3D7)
Length = 246
Score = 50.4 bits (115), Expect = 4e-05
Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 3/165 (1%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSM---FARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR 343
+ G R DGR+ +E R + + + G ++ E+ TK+ + P E +E +
Sbjct: 9 DEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDE-K 67
Query: 344 QLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYI 523
L + C V +PF+ K+R D + +S +R + + N +I++ +YI
Sbjct: 68 CL--VKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYI 125
Query: 524 LEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+E DG + + I++ SV + N + +D
Sbjct: 126 IERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVD 170
>UniRef50_Q6BY29 Cluster: Debaryomyces hansenii chromosome A of
strain CBS767 of Debaryomyces hansenii; n=2;
Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
A of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 290
Score = 50.4 bits (115), Expect = 4e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLG 352
EN KR D E R MF ++ +V+ A GSAY+E+ T + SVF PR P + F
Sbjct: 38 ENKKRND-----EVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPR--PIRGSFIDRA 90
Query: 353 QLYCEVKFAPF--------------SCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFF 490
E KF P+ + RP + ++E+K +S L +L P + +
Sbjct: 91 SFSVECKFLPYVTQPNEITFNGKATNFNNNGRPSLTNIEQK-ISSYLETSLLPCILLEKY 149
Query: 491 PNYQIDVLIYIL 526
P ID+ + ++
Sbjct: 150 PKSTIDIFVSVI 161
>UniRef50_A7DRS4 Cluster: 3' exoribonuclease; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: 3' exoribonuclease -
Candidatus Nitrosopumilus maritimus SCM1
Length = 272
Score = 50.4 bits (115), Expect = 4e-05
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLG 352
E GKR DGR L+E+R + T+ + +A GSA V L T+VVC V + P + G
Sbjct: 20 EQGKRVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRPFP-DTGDKG 78
Query: 353 QLYCEVKFAPFSCPR-KRRPYVPDVEEKA 436
C + P S P + P P+V E A
Sbjct: 79 LFICTAELLPLSHPTVETGPPGPEVIELA 107
>UniRef50_Q54Q83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 237
Score = 49.2 bits (112), Expect = 9e-05
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR N R + + +++A GSA K+KV+ +V+ P E+ + + L + Y
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKIL-KSYV 65
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
EV F P Y+ D E++ L ++ A+E + +P QI V++ + DGS
Sbjct: 66 EVTFTP---AFGNTNYI-DKEKELL---IKNAVESMILTTLYPRTQISVILQVFSDDGSI 118
Query: 545 XXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGN-KMFIDPTEIXEH 679
+ M ++ S ++ + +++DP+ E+
Sbjct: 119 VSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYVDPSTEEEN 164
>UniRef50_A0D7C7 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_4,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 227
Score = 48.0 bits (109), Expect = 2e-04
Identities = 37/162 (22%), Positives = 68/162 (41%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLY 361
KR+DGR L + R++ + + GS + T+V+C V PR Q+E L
Sbjct: 4 KRQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPR-AKTQSEL-----LL 57
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
E +PFS +R D + + L+++ E + +I + + ++++DGS
Sbjct: 58 IEYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGS 117
Query: 542 CXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTE 667
V M D + S +V + + +D T+
Sbjct: 118 SKSAVFNAITLALLDAGVSMKDFLVSVTVGLDQGNLIVDLTQ 159
>UniRef50_A7P578 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=6; Magnoliophyta|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 46.8 bits (106), Expect = 5e-04
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR N+ R + +++++A GSA TKV+ +V+ P+ +NE + +
Sbjct: 5 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE--KACI 62
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
EV + P + +P EK V L++ L+ + PN ++I ++ DG+
Sbjct: 63 EVVWKP-KTGQIGKP------EKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGAL 115
Query: 545 XXXXXXXXXXXXXXXXVPMFDI-ITSCSVAVIGNKMFIDPTEIXE 676
+P+ + + C + +DPT++ E
Sbjct: 116 LPCAINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEE 160
>UniRef50_A7AQY6 Cluster: Exosome complex exonuclease rrp41,
putative; n=1; Babesia bovis|Rep: Exosome complex
exonuclease rrp41, putative - Babesia bovis
Length = 259
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +2
Query: 437 LSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIIT 616
+S A+ EP + H + N I + + +LE DG + M DII
Sbjct: 105 ISRAVVGTFEPVIISHLYKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIV 164
Query: 617 SCSVAVIGNKMFIDPTEI 670
+C+ ++ + IDP ++
Sbjct: 165 ACTAVMLNETLLIDPNQL 182
>UniRef50_A5KBP5 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 271
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/149 (19%), Positives = 61/149 (40%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLY 361
+R + R+ NE R MF + + S + L TK++ ++ P+ +N G+++
Sbjct: 31 RRINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPKP-DSKNATYDKGKVF 89
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
E++ + D ++ + L + + + +P I++ I+++DG
Sbjct: 90 LEIRSLNMNDDGAN-----DESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDGG 144
Query: 542 CXXXXXXXXXXXXXXXXVPMFDIITSCSV 628
C + M DII S +V
Sbjct: 145 CLSATLTCISLALTNAQIKMRDIIVSVNV 173
>UniRef50_A5DL78 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 252
Score = 44.0 bits (99), Expect = 0.003
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Frame = +2
Query: 218 SMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPF---- 385
SMF +T +V A GSAYVE V SV+ PR P + F + E KF P+
Sbjct: 41 SMFLKTGLVDTASGSAYVEADDCIVQVSVYGPR--PIRGSFIEKASFSVECKFLPYVTKV 98
Query: 386 -----SCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYIL 526
+ +P + +E++ +S + AL P + +P ID+ + ++
Sbjct: 99 AAEHQNTNPNGKPGMNSIEQR-ISTYVETALLPCLLLENYPKSTIDIYVTVI 149
>UniRef50_A3H8A6 Cluster: 3' exoribonuclease; n=1; Caldivirga
maquilingensis IC-167|Rep: 3' exoribonuclease -
Caldivirga maquilingensis IC-167
Length = 279
Score = 44.0 bits (99), Expect = 0.003
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Frame = +2
Query: 155 LKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN 334
L+ L E GKR D R+L R + R ++ A GSA V L TKV+ + P ++
Sbjct: 17 LRRLISE-GKRPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKPFED 75
Query: 335 EFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE-----PAVCRHFFPN- 496
+ G L ++ P + P P PD ++ + +AL P P
Sbjct: 76 TPNE-GNLIVNLETPPLAAP-TFEPGPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGK 133
Query: 497 --YQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVP 598
Y + V IY+L HDG+ VP
Sbjct: 134 SVYSMWVDIYVLNHDGNLIDSSMLAAVSAIANAQVP 169
>UniRef50_Q9YC05 Cluster: Probable exosome complex exonuclease 2;
n=4; Desulfurococcales|Rep: Probable exosome complex
exonuclease 2 - Aeropyrum pernix
Length = 276
Score = 44.0 bits (99), Expect = 0.003
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQL 358
G R R+L R++ T ++ +A+GSA V+L KT+V+ V P ++ Q G L
Sbjct: 26 GWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQ-GVL 84
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVA------LRQA----LEPAVCRHFFPNYQID 508
+F P + P P PD E A+ +A LR+ LE V R + +
Sbjct: 85 TVHAEFVPLASP-VFEPGPPD--ENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141
Query: 509 VLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFD 607
V +YI++HDG+ +P ++
Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTARLPRYE 174
>UniRef50_A5GII1 Cluster: Ribonuclease PH; n=3; Synechococcus|Rep:
Ribonuclease PH - Synechococcus sp. (strain WH7803)
Length = 241
Score = 43.6 bits (98), Expect = 0.005
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
RKDGR+ + R D + A S V +T V+CSV +P + LG L
Sbjct: 6 RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65
Query: 365 EVKFAPFSCPRKRR 406
E + P S P ++R
Sbjct: 66 EYRLLPGSTPERQR 79
>UniRef50_Q6QN28 Cluster: Polynucleotide phosphorylase; n=3;
Candidatus Phytoplasma asteris|Rep: Polynucleotide
phosphorylase - Aster yellows witches'-broom phytoplasma
Length = 716
Score = 42.7 bits (96), Expect = 0.008
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Frame = +2
Query: 152 QLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV----FDPRE 319
++++L + R D REL E R++ ++ D++ +A GSA KT+ + +V +
Sbjct: 315 EMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESK 374
Query: 320 IPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNY 499
I Q + F PFS R P E +A+ + Y
Sbjct: 375 IIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEEKDFPY 434
Query: 500 QIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
I V+ ILE +GS VP+ + SV ++
Sbjct: 435 TIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLV 480
>UniRef50_A0RXU0 Cluster: RNase PH-related exoribonuclease; n=1;
Cenarchaeum symbiosum|Rep: RNase PH-related
exoribonuclease - Cenarchaeum symbiosum
Length = 270
Score = 42.7 bits (96), Expect = 0.008
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +2
Query: 161 ALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF 340
A E G+R DGR L+E R + T+ + +A+GSA V L +T VV V + P +
Sbjct: 16 AALLERGERIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGVKVQPDRPFP-DV 74
Query: 341 RQLGQLYCEVKFAPFSCP 394
G C + P + P
Sbjct: 75 GDRGIFICTAEILPLAHP 92
>UniRef50_Q6C6V0 Cluster: Yarrowia lipolytica chromosome E of strain
CLIB 122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome E of
strain CLIB 122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 262
Score = 41.5 bits (93), Expect = 0.018
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 21/170 (12%)
Frame = +2
Query: 218 SMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFS-CP 394
S+F +T +V A GSAY+EL K+V V PR P + F L + KF P S C
Sbjct: 35 SIFVKTGVVENANGSAYLELDDIKIVAIVHGPR--PMRGLFTTSAILNVDTKFLPVSLCD 92
Query: 395 RKRR----------PYVPDVE-------EKALSVALRQALEPAVCRHFFPNYQIDVLIYI 523
+ + Y+ +K +S + +L P++ +P IDV I +
Sbjct: 93 IESKSAVVSSTQLTQYIRSASTTQSSSLQKNVSSYVHTSLLPSILVEKYPKSTIDVSISV 152
Query: 524 LEHDGSCXXXXXXX---XXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPT 664
L + + DI+T+ SV + NK + P+
Sbjct: 153 LSSSNNTKTTVAAAVSCAGAALADSGLECTDIVTAGSVLLDENKATVSPS 202
>UniRef50_Q6L224 Cluster: Ribonuclease PH; n=2;
Thermoplasmatales|Rep: Ribonuclease PH - Picrophilus
torridus
Length = 260
Score = 41.5 bits (93), Expect = 0.018
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
+ GKR DGR LN+ R + + + +A GSA VEL +TKVV V
Sbjct: 22 KRGKRLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGV 65
>UniRef50_Q01CT7 Cluster: Exosomal 3'-5' exoribonuclease complex,
subunit Rrp41 and related exoribonucleases; n=2;
Ostreococcus|Rep: Exosomal 3'-5' exoribonuclease
complex, subunit Rrp41 and related exoribonucleases -
Ostreococcus tauri
Length = 378
Score = 41.1 bits (92), Expect = 0.024
Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 2/166 (1%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR R V A GSA + T VV +V P I E G +
Sbjct: 129 RPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVIDV 188
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
E+ AP R +++A LR A+E V FP + + + ++ DG+
Sbjct: 189 ELS-APGWMSRD--------DQRACEGRLRGAIERCVELRDFPRFGLRISARVVSDDGNA 239
Query: 545 XXXXXXXXXXXXXXXXVPMFDII--TSCSVAVIGNKMFIDPTEIXE 676
VPM +I +C++ G+ M IDPT+ E
Sbjct: 240 EAACVNAVCCALIDANVPMRGLICANACALTREGS-MVIDPTKREE 284
>UniRef50_UPI0000519D97 Cluster: PREDICTED: similar to
polyribonucleotide nucleotidyltransferase 1; n=2;
Coelomata|Rep: PREDICTED: similar to polyribonucleotide
nucleotidyltransferase 1 - Apis mellifera
Length = 770
Score = 40.7 bits (91), Expect = 0.032
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 158 KALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
++L E KR DGR +NE R + + D+ GSA+ + +T+V+C+V
Sbjct: 345 RSLIFETEKRCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTV 393
>UniRef50_Q2S1P1 Cluster: Polyribonucleotide nucleotidyltransferase;
n=1; Salinibacter ruber DSM 13855|Rep:
Polyribonucleotide nucleotidyltransferase - Salinibacter
ruber (strain DSM 13855)
Length = 722
Score = 39.5 bits (88), Expect = 0.074
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 4/166 (2%)
Frame = +2
Query: 152 QLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV---FDPREI 322
+++ + E GKR DGR+ + R ++ + + GSA +T+V+ S+
Sbjct: 321 EMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQ 380
Query: 323 PHQNEFRQLGQ-LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNY 499
P F + Y +F PFS P E S+ +AL P + Y
Sbjct: 381 PVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRPVIPEQDEFPY 440
Query: 500 QIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
I + ++E +GS VP+ + ++ ++
Sbjct: 441 TIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLV 486
>UniRef50_Q96B26 Cluster: Exosome complex exonuclease RRP43; n=37;
Eumetazoa|Rep: Exosome complex exonuclease RRP43 - Homo
sapiens (Human)
Length = 276
Score = 39.5 bits (88), Expect = 0.074
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
V P C + R P E + S + +E
Sbjct: 82 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114
>UniRef50_Q8GZQ3 Cluster: Polynucleotide phosphorylase; n=10;
cellular organisms|Rep: Polynucleotide phosphorylase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 922
Score = 39.1 bits (87), Expect = 0.098
Identities = 47/177 (26%), Positives = 69/177 (38%), Gaps = 6/177 (3%)
Frame = +2
Query: 155 LKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTK--VVCSVFD---PRE 319
L+ E GKR DGR L+E R + +R ++ +A GS +T+ V ++ D +
Sbjct: 437 LRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQR 496
Query: 320 IPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPN 496
I + + + Y + F P S R P E +ALE + FP
Sbjct: 497 IDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFP- 555
Query: 497 YQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTE 667
Y I V ++E +GS VP+ CSVA I M D E
Sbjct: 556 YTIRVESTVIESNGSSSMASVCGGCLALQDAGVPV-----KCSVAGIAMGMVWDTEE 607
>UniRef50_Q10205 Cluster: Putative exosome complex exonuclease
RRP43; n=1; Schizosaccharomyces pombe|Rep: Putative
exosome complex exonuclease RRP43 - Schizosaccharomyces
pombe (Fission yeast)
Length = 270
Score = 39.1 bits (87), Expect = 0.098
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR ++E R + + +S A GSA + + VC + P +N + G +
Sbjct: 35 RSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNE-GWIVP 93
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
++ +P C K +P P + +S L Q L+
Sbjct: 94 NLELSPL-CSSKFKPGPPSDLAQVVSQELHQTLQ 126
>UniRef50_Q9ZAE1 Cluster: Polynucleotide phosphorylase; n=13;
Bacteria|Rep: Polynucleotide phosphorylase - Thermus
thermophilus
Length = 713
Score = 38.3 bits (85), Expect = 0.17
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Frame = +2
Query: 152 QLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVF----DPRE 319
+L+ L E GKR DGR + R ++ D++ +A GSA +T+V+ +V +
Sbjct: 316 ELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQ 375
Query: 320 IPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNY 499
I + + F PFS RR E ++AL+ + + Y
Sbjct: 376 ILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPY 435
Query: 500 QIDVLIYILEHDGS 541
I V+ +LE +GS
Sbjct: 436 TIRVVGDVLESNGS 449
>UniRef50_Q4PHF3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 379
Score = 38.3 bits (85), Expect = 0.17
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +2
Query: 155 LKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
L+ L + +R DGR+L RS+ T + +QA GS+ + L T+++C +
Sbjct: 15 LRGLTSDPPQRSDGRDLLAFRSLDVETGVAAQANGSSRITLGGTEILCGI 64
>UniRef50_Q8TCS8 Cluster: Polyribonucleotide nucleotidyltransferase
1, mitochondrial precursor; n=44; Coelomata|Rep:
Polyribonucleotide nucleotidyltransferase 1,
mitochondrial precursor - Homo sapiens (Human)
Length = 783
Score = 38.3 bits (85), Expect = 0.17
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 358
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 511
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+LE +GS VP+ + ++ ++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV 514
>UniRef50_Q54CU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 293
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 137 KTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
K + + Y R DGR L++ R T ++ A GS++V++ T VVC V
Sbjct: 6 KIHPLEFYRKYLVRSVRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCGV 61
>UniRef50_Q6CQR4 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome D of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=2; Saccharomycetaceae|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 225
Score = 37.9 bits (84), Expect = 0.23
Identities = 28/103 (27%), Positives = 42/103 (40%)
Frame = +2
Query: 221 MFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRK 400
M T ++ GS+ V TKV+CSV P E + E QL E+ P
Sbjct: 1 METTTHVLGHVDGSSVVSNSGTKVICSVSGPMEPKSRQELPT--QLALEIIVKP------ 52
Query: 401 RRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILE 529
V EK + +R L P + R+ P + + + +LE
Sbjct: 53 -AEGVQSTREKLMEDQIRSVLTPVLARYLHPRQFVQICLQVLE 94
>UniRef50_Q9UXC0 Cluster: Probable exosome complex exonuclease 2;
n=5; Sulfolobaceae|Rep: Probable exosome complex
exonuclease 2 - Sulfolobus solfataricus
Length = 275
Score = 37.9 bits (84), Expect = 0.23
Identities = 29/92 (31%), Positives = 44/92 (47%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLG 352
E G R+DGR+L + R + D +A GSA V+L T V+ + P+++ Q G
Sbjct: 24 EKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQ-G 82
Query: 353 QLYCEVKFAPFSCPRKRRPYVPDVEEKALSVA 448
L V+ P + P PD E A+ +A
Sbjct: 83 NLIVNVELLPLAY-ETFEPGPPD--ENAIELA 111
>UniRef50_P53256 Cluster: Exosome complex exonuclease RRP46; n=3;
Saccharomycetales|Rep: Exosome complex exonuclease RRP46
- Saccharomyces cerevisiae (Baker's yeast)
Length = 223
Score = 37.1 bits (82), Expect = 0.40
Identities = 31/104 (29%), Positives = 42/104 (40%)
Frame = +2
Query: 218 SMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPR 397
S+ A ++ GS+ + TKV+CSV P E + E QL E+ P
Sbjct: 2 SVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPT--QLALEIIVRPAKG-- 57
Query: 398 KRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILE 529
V EK L LR L P + RH +P + ILE
Sbjct: 58 -----VATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILE 96
>UniRef50_Q95Z09 Cluster: Rrp41p homologue; n=1; Trypanosoma
brucei|Rep: Rrp41p homologue - Trypanosoma brucei
Length = 256
Score = 36.7 bits (81), Expect = 0.52
Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 18/182 (9%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R+DGR E R RT +SQ GSA+ T V ++ P +N R ++
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCIHV 65
Query: 365 -EVKFAP--------FSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLI 517
P R+ R D E K +L +A+ VC FP ++ +
Sbjct: 66 NRAARIPQEGGTGRLIMMERRERERCEDGELKQFLTSLVEAI---VCLDRFPRCVLEAHV 122
Query: 518 YILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITS-----CSVAVIGN----KMFIDPTEI 670
+L DG+ VP I + C+ GN ++F+DPT +
Sbjct: 123 TVLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVSLIMCNPEASGNEGEPEIFLDPTAV 182
Query: 671 XE 676
E
Sbjct: 183 EE 184
>UniRef50_Q59LU3 Cluster: Potential exosome component Mtr3p; n=3;
Saccharomycetales|Rep: Potential exosome component Mtr3p
- Candida albicans (Yeast)
Length = 293
Score = 36.7 bits (81), Expect = 0.52
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 218 SMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAP 382
S F + ++ A GSAY+E+ T + S+F PR P + F + + KF P
Sbjct: 40 SFFLKHSIIDNANGSAYLEINNTIIEVSIFGPR--PIRGSFIDRASVSVDCKFLP 92
>UniRef50_Q8TGX5 Cluster: Probable exosome complex exonuclease 2;
n=9; Archaea|Rep: Probable exosome complex exonuclease 2
- Methanosarcina acetivorans
Length = 266
Score = 36.3 bits (80), Expect = 0.69
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
GKR+DGR + R + T+++ +A+GSA V L T+V+ V
Sbjct: 23 GKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGV 64
>UniRef50_Q74CS9 Cluster: Polyribonucleotide nucleotidyltransferase;
n=28; Proteobacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Geobacter sulfurreducens
Length = 697
Score = 35.9 bits (79), Expect = 0.91
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 4/159 (2%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLG 352
++G R DGR+ R + M+ +A GSA +T+ + + I Q G
Sbjct: 309 KDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYG 368
Query: 353 Q----LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 520
+ F PFS P E + +ALE V +H Y I ++
Sbjct: 369 ETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIRIVSD 428
Query: 521 ILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
ILE +GS VP+ + ++ +I
Sbjct: 429 ILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLI 467
>UniRef50_Q5DA97 Cluster: SJCHGC04772 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04772 protein - Schistosoma
japonicum (Blood fluke)
Length = 277
Score = 35.9 bits (79), Expect = 0.91
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
E G R DGR +E R + T+++S A GSA + + +T +VC V
Sbjct: 19 EVGCRMDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCV 62
>UniRef50_Q7SEX2 Cluster: Putative uncharacterized protein
NCU03159.1; n=6; Fungi/Metazoa group|Rep: Putative
uncharacterized protein NCU03159.1 - Neurospora crassa
Length = 357
Score = 35.9 bits (79), Expect = 0.91
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
EN R +GR +EAR + T ++ A GSA V T VVC V
Sbjct: 34 ENPCRTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCGV 77
>UniRef50_Q4DJB2 Cluster: Ribosomal RNA processing protein 41B,
putative; n=2; Trypanosoma cruzi|Rep: Ribosomal RNA
processing protein 41B, putative - Trypanosoma cruzi
Length = 285
Score = 35.5 bits (78), Expect = 1.2
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLG-QLY 361
R+DGR E R RT ++Q GSA+ T VV +V P Q ++R+ G Q+Y
Sbjct: 7 RRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGP-VAARQEDYRKCGVQVY 65
Query: 362 CEVKFAPFSCPRKRRPYVPD--VEEKAL----SVALRQALEPAVCRHFFPNYQIDVLIYI 523
R V + VE++ + + L +++ V FP ++V + I
Sbjct: 66 VNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTI 125
Query: 524 LEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
L DG+ VP + + S+ +
Sbjct: 126 LADDGALLSVATNALMCALLDAGVPCRTTVAAVSIVAL 163
>UniRef50_Q2H4W8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 210
Score = 35.5 bits (78), Expect = 1.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
R +GR E R + A+T +S A GS+ V L T V+C V
Sbjct: 38 RTNGRGTQETRPLHAKTSSLSHAHGSSLVRLGDTTVLCGV 77
>UniRef50_Q7UR95 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Planctomycetaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Rhodopirellula baltica
Length = 818
Score = 35.1 bits (77), Expect = 1.6
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVF-----DPREIPH-QNEF 340
G R DGR+ N R++ TD++ + GSA + +T+ + ++ D + + Q+E+
Sbjct: 379 GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEY 438
Query: 341 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPNYQIDVLI 517
+ + + F +S R P E +++ P + FP Y I V+
Sbjct: 439 SK--KFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFP-YTIRVIS 495
Query: 518 YILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
I E +GS VP+ + + SV ++
Sbjct: 496 DITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLV 535
>UniRef50_Q2NEX4 Cluster: Putative exosome complex, exonuclease 2
subunit; n=1; Methanosphaera stadtmanae DSM 3091|Rep:
Putative exosome complex, exonuclease 2 subunit -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 265
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN 334
GKR D R+ +E R++ +T+ + +A GSA V + T V+ V P N
Sbjct: 20 GKRIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTPFNN 71
>UniRef50_UPI0000E45B97 Cluster: PREDICTED: similar to Exosome
component 5, partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Exosome component
5, partial - Strongylocentrotus purpuratus
Length = 185
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 413 VPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXX 592
+ V EKAL +R E + FP +D+++ ++ G+
Sbjct: 36 ISGVREKALERMIRNTCETVLLTTLFPRSSVDIIVQEIQDAGALLACSINAACLAMINAG 95
Query: 593 VPM-FDIITSCSVAVIGNKMFIDPTE 667
+PM + SC + ++ +DPT+
Sbjct: 96 IPMKCTVAASCCMMGKDEELIMDPTK 121
>UniRef50_UPI000051A59D Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP43 (Ribosomal RNA-processing
protein 43) (Exosome component 8) (p9) (Opa-interacting
protein 2); n=3; Endopterygota|Rep: PREDICTED: similar
to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) - Apis mellifera
Length = 281
Score = 34.7 bits (76), Expect = 2.1
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR+ R + ++ A SA ++ T +VC + +P + E + G +
Sbjct: 23 RPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKSELAVP-KAESPECGYIVP 81
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQAL 463
++ P C K RP P + + ++ + L
Sbjct: 82 NIELPPL-CSPKFRPGPPSDQAQVITKLVENIL 113
>UniRef50_Q64CA6 Cluster: TRNA nucleotidyltransferase; n=4;
environmental samples|Rep: TRNA nucleotidyltransferase -
uncultured archaeon GZfos24D9
Length = 260
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
E GKR DGR + R + D++ +A GS V++ T V+ V
Sbjct: 19 EKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGV 62
>UniRef50_Q4DQX1 Cluster: ABC transporter, putative; n=3;
Eukaryota|Rep: ABC transporter, putative - Trypanosoma
cruzi
Length = 1170
Score = 34.3 bits (75), Expect = 2.8
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 524 RCILKHQSDSLGRSAYRQPVQEPAVKQQTRLSLLHQEHTVDVSS-GMKTVQISLHNITG 351
RC L SDS G A +++ +QQ RLSL DVSS G +++ +S H G
Sbjct: 434 RCSLDVASDSSGTPAKTSLLEKKEPQQQNRLSLRGDSAEEDVSSNGTESIGLSFHRQPG 492
>UniRef50_Q29QQ9 Cluster: IP10364p; n=8; Endopterygota|Rep: IP10364p
- Drosophila melanogaster (Fruit fly)
Length = 296
Score = 33.9 bits (74), Expect = 3.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPH 328
E+ R DGR + R M T +VS A GSA + L T ++ V ++P+
Sbjct: 19 EDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPN 70
>UniRef50_Q6CJI8 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome F of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 236
Score = 33.9 bits (74), Expect = 3.7
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Frame = +2
Query: 185 RKDGRELNEAR-SMFARTDMVSQAKGSAYVELR-----KTKVVCSVFDPREIPHQNEFRQ 346
R DG + S+F TD+V+ A GS+Y+E + V+ SVF PR P + F+
Sbjct: 32 RDDGNGNKSGKESVFISTDLVTNANGSSYLEYMDGTSDQVLVMSSVFGPR--PLRGSFQS 89
Query: 347 LGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYIL 526
+ + K ++ E K + L + +P ID+ I ++
Sbjct: 90 KASVSIQFKEVTLE-------HLNTGEIKEICTFLTNVFNAVINVEKYPKSGIDIFIDLI 142
Query: 527 EHDGS 541
+H S
Sbjct: 143 QHSNS 147
>UniRef50_Q4N8R6 Cluster: Exosome complex exonuclease rrp41,
putative; n=2; Theileria|Rep: Exosome complex
exonuclease rrp41, putative - Theileria parva
Length = 259
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 431 KALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDI 610
K L++A++ + + H + I + I ++E+DGS V + DI
Sbjct: 128 KDLAMAVKSTYQEMIISHCYKTSSISIFINVIEYDGSIKSTVLNAVGLALIDAGVSLKDI 187
Query: 611 ITSCSVAVI 637
++S +V+ +
Sbjct: 188 VSSSTVSYL 196
>UniRef50_Q5KWI5 Cluster: Ribonuclease PH; n=82; Bacteria|Rep:
Ribonuclease PH - Geobacillus kaustophilus
Length = 256
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIP 325
R DGR E R + + A+GS +E+ TKV+C+ ++P
Sbjct: 2 RADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVP 48
>UniRef50_Q7VAZ5 Cluster: Ribonuclease PH; n=37; Bacteria|Rep:
Ribonuclease PH - Prochlorococcus marinus
Length = 722
Score = 33.1 bits (72), Expect = 6.4
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 7/162 (4%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMV-SQAKGSAYVELRKTKVVCSV-----FDPREIPHQN 334
++GKR DGR L+E R + A ++ + GS + T+V+ + D +E+ N
Sbjct: 319 KDGKRVDGRALDEVREISAEAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLN 378
Query: 335 EFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPNYQIDV 511
++ F P+S R P E +A+ P + + FP Y + V
Sbjct: 379 PSPDKTYIH-HYNFPPYSVGETRPMRTPGRREVGHGALAERAIIPVLPPKESFP-YVLRV 436
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+ +L +GS VP+ ++ ++ +I
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGLI 478
>UniRef50_A4EC74 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 748
Score = 33.1 bits (72), Expect = 6.4
Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 6/178 (3%)
Frame = +2
Query: 122 PXASLKTYAXQLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCS 301
P A K ++ + E G+R DGR +E R + + + + GS + +T+V+ S
Sbjct: 298 PVALKKLEKKAMRTMVVETGERVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVL-S 356
Query: 302 VFDPREIPHQNEFRQL----GQLYC-EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
V + + G+ Y F PF R P E +AL
Sbjct: 357 VLSLGMLNEGQRLDTIEPTEGKRYMHHYNFPPFCTGETGRMGSPKRREIGHGNLAERALL 416
Query: 467 PAV-CRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
P + + FP Y I V+ ++E +GS VP+ ++ ++ +I
Sbjct: 417 PVLPDENEFP-YAIRVVSEVMESNGSSSMASTCGSTLALMDGGVPIKRPVSGIAMGLI 473
>UniRef50_Q2QT85 Cluster: 3' exoribonuclease family, domain 1
containing protein, expressed; n=2; Oryza sativa
(japonica cultivar-group)|Rep: 3' exoribonuclease
family, domain 1 containing protein, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 284
Score = 33.1 bits (72), Expect = 6.4
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
R DGR + R++ T ++ QA GSA V L T+V+ +V
Sbjct: 21 RTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60
>UniRef50_Q54VM4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 324
Score = 33.1 bits (72), Expect = 6.4
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPH-QNEFRQL 349
EN R DGR + R+ T + A GSA V+L +T+V+ V EI H Q+E
Sbjct: 17 ENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV--KAEITHIQSEITSN 74
Query: 350 GQLYCEVKFAPFS--CPRKRRPYVPDVEEKALSVALRQALE 466
Q K FS C P + L++ L + LE
Sbjct: 75 LQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLE 115
>UniRef50_Q29FV8 Cluster: GA17078-PA; n=1; Drosophila
pseudoobscura|Rep: GA17078-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 368
Score = 33.1 bits (72), Expect = 6.4
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = +2
Query: 152 QLKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQ 331
QL AL KR+ GR L+ M D+V Q + A+ E + V +F P+ I
Sbjct: 15 QLLALRCSYSKRRAGRLLSNLYLMLVILDLVGQMRSYAHGE--EPMVDRMLFFPKAIQAV 72
Query: 332 NEFRQLGQLYCEVKFAPFSCPRKRR 406
N F +L + FA C R+RR
Sbjct: 73 NVFYKLVHALIAL-FALVGCQRERR 96
>UniRef50_A2FL81 Cluster: 3' exoribonuclease family, domain 1
containing protein; n=1; Trichomonas vaginalis G3|Rep:
3' exoribonuclease family, domain 1 containing protein -
Trichomonas vaginalis G3
Length = 203
Score = 33.1 bits (72), Expect = 6.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 242 VSQAKGSAYVELRKTKVVCSVFDPREIPHQNE 337
+ A GSAYVEL TKV +V+ P E +Q +
Sbjct: 12 IKGAAGSAYVELNDTKVFAAVYGPMEPENQQQ 43
>UniRef50_Q8SW95 Cluster: Putative uncharacterized protein
ECU02_1420; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU02_1420 - Encephalitozoon
cuniculi
Length = 189
Score = 33.1 bits (72), Expect = 6.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 221 MFARTDMVSQAKGSAYVELRKTKVVCSV 304
M RT M+S+A S Y++ KT VVCS+
Sbjct: 1 MEVRTGMISKALSSCYLKTNKTSVVCSI 28
>UniRef50_Q9SSE1 Cluster: MLP3.20 protein; n=5; core
eudicotyledons|Rep: MLP3.20 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 297
Score = 32.7 bits (71), Expect = 8.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
R DGR+ R ++ T ++ QA GSA V + T V+ SV
Sbjct: 20 RTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASV 59
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,858,936
Number of Sequences: 1657284
Number of extensions: 9461376
Number of successful extensions: 20121
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 19635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20067
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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