Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_K04
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    79   6e-16
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    67   2e-12
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    39   6e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    29   0.47 
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    28   1.4  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    27   1.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.8  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    25   7.7  

>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
 Frame = +2

Query: 197 RELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN-EFRQLGQLYCEVK 373
           R+++  R ++ +    ++A GS+Y E  K K+ C+V  PR  P +   FR   +L CE +
Sbjct: 30  RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPR--PSKTFAFRSSAKLNCEFR 87

Query: 374 FAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG--SCX 547
            +PFS    R+ +V  VEEK+ S  +  A+ P++  H +P   IDV I ++E DG  +  
Sbjct: 88  LSPFSTS-VRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATL 146

Query: 548 XXXXXXXXXXXXXXXVPMFDIITSCSVAVIGN--KMFIDPTEIXE 676
                          +   D++T  SV    N  + +IDP  + E
Sbjct: 147 AAAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDE 191


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
 Frame = +2

Query: 179 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR-QLGQ 355
           G R DGR  +E R+   R  +     GSA++EL  TKV+C V  P E   +++ R     
Sbjct: 11  GLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTF 70

Query: 356 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 535
           +  E+  A FS    ++ +  D   +   +AL+   E  +    +P  QI V +++L+ D
Sbjct: 71  VNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDD 130

Query: 536 GSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
           G+                 +P+ D +   +  ++ + M +D   + E
Sbjct: 131 GAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEE 177


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 25/94 (26%), Positives = 43/94 (45%)
 Frame = +2

Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
           R DGR ++E R +    + +S A GSA +   +   VC +      P +N   + G +  
Sbjct: 35  RSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNE-GWIVP 93

Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
            ++ +P  C  K +P  P    + +S  L Q L+
Sbjct: 94  NLELSPL-CSSKFKPGPPSDLAQVVSQELHQTLQ 126


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQ 331
           +++  R  NE+     + +  +    + Y   +K KV+  VFDPR+  H+
Sbjct: 36  RKRQKRNSNESSKSTVKRNSGTNGASTDYKNSQKEKVINPVFDPRKPAHE 85


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 542 MTRHVLRCILKHQSDSLGRSAYRQPVQEPAVKQQTRLSLLHQEH 411
           + +HV+RC L+   +   R A R  + EP ++  T   +L  +H
Sbjct: 220 LLKHVIRCYLRLSDNPRAREALRHCLPEP-LRDATFAQVLKDDH 262


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +2

Query: 206 NEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAP 382
           N +     R D+ +   GS  +E  +       F P  +   NEF+ + +L+C + + P
Sbjct: 388 NSSDLFLVRCDLYNVDHGSLKIEESRLG-----FPPPVVRMSNEFKDIAELFCRIPYMP 441


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 194 HLFFSRFXHTELLIVRRMFSRRLXERFXMRHEXMDXLKLRKDSGMMIDLFET 39
           H+F      T  + VRR+ +  L   F   ++  D + +++    M+++ ET
Sbjct: 545 HIFQQLISDTSSVTVRRLATSTLIRLFYYYYDLRDAVPIQETLAKMLEILET 596


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 323 PHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCR 481
           P QN  R+L  L   +    F    +     PD E++A   +L++ L+P + R
Sbjct: 539 PLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQEHLQPYILR 591


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVE 274
           R DGR +++ R +  + D++    GSA V+
Sbjct: 23  RNDGRSIDQLRPLSGQVDVLPGTNGSARVK 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,234
Number of Sequences: 5004
Number of extensions: 42008
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)