Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_K04
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 102 2e-22
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 101 5e-22
09_02_0074 + 3905810-3905981,3906115-3906175,3906522-3906573,390... 61 9e-10
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 36 0.022
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 34 0.091
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 33 0.16
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 31 1.1
01_01_0433 + 3282195-3285185 28 7.9
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 102 bits (245), Expect = 2e-22
Identities = 58/164 (35%), Positives = 79/164 (48%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR ++ R F +T + A GSAY E KTKV+ SVF PRE + G+L C
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
V + F+ P + + + K S L +ALE AV H FP +DV +LE GS
Sbjct: 99 NVSYTTFATPIRGQ----GTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSD 154
Query: 545 XXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ M+D++TS SV+ G + IDPT E
Sbjct: 155 LPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEE 198
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 101 bits (242), Expect = 5e-22
Identities = 57/164 (34%), Positives = 80/164 (48%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR ++ R F +T + A GSAY E KTKV+ SVF PRE + G+L C
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSC 544
V + F+ P + + ++ K S L +ALE AV H FP +DV +LE GS
Sbjct: 101 NVSYTTFATPIRGQ----GMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSD 156
Query: 545 XXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ ++D++TS SV+ G + IDPT E
Sbjct: 157 LPIIISCASLALADAGIMIYDLVTSVSVSCFGKNIIIDPTSDEE 200
>09_02_0074 +
3905810-3905981,3906115-3906175,3906522-3906573,
3906791-3906832,3906910-3906977,3907521-3907599,
3907685-3907721,3908048-3908164,3908247-3908332,
3908552-3908641,3909679-3909779,3909801-3909885
Length = 329
Score = 60.9 bits (141), Expect = 9e-10
Identities = 29/99 (29%), Positives = 46/99 (46%)
Frame = +2
Query: 362 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
CE + A FS +RR D +S+ +RQ +E ++ H P QID+ + +L+ DG
Sbjct: 112 CEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADGG 171
Query: 542 CXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFID 658
+PM DI+TSCS + + +D
Sbjct: 172 TRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLD 210
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 36.3 bits (80), Expect = 0.022
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Frame = +2
Query: 155 LKALYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTK--VVCSVFD---PRE 319
L+ E GKR DGR E R + ++ ++ +A GSA +T+ V ++ D +
Sbjct: 401 LRRRIVEGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQR 460
Query: 320 IPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPN 496
I + + + Y + F P S R P+ E + +ALEP + FP
Sbjct: 461 IDNLVDTEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFP- 519
Query: 497 YQIDVLIYILEHDGS 541
Y I V I E +GS
Sbjct: 520 YTIRVESTITESNGS 534
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 34.3 bits (75), Expect = 0.091
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 173 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
E G R DGR+L+E R ++ + GSA T+V+C+V
Sbjct: 369 EKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTV 412
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/119 (23%), Positives = 52/119 (43%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGR N+ R + + +A GSA T V+ +V+ P+ + E + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASI-- 62
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 541
EV + P + + +EK + L++ L+ PN V++ ++ +DGS
Sbjct: 63 EVVWKPMTGQIGK-------QEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGS 114
>01_01_0420 +
3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 34 QFVSNKSI-IMPLSFRSFNXSIXSCLXXNLSXSLLENIR 147
+F S KS+ ++ LS+ +FN SI SCL ++S + N++
Sbjct: 533 EFCSAKSLQLLDLSYNNFNGSISSCLMDSVSTLQVLNLK 571
>01_01_0433 + 3282195-3285185
Length = 996
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 37 FVSNKSI-IMPLSFRSFNXSIXSCLXXNLSXSLLENIR 147
F + KS+ I+ LS+ N SI SCL N S + N+R
Sbjct: 630 FCTVKSLQILDLSYNILNGSIPSCLMENSSTLKILNLR 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,964
Number of Sequences: 37544
Number of extensions: 263116
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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