Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_K04
(682 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6 pro... 88 2e-17
BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4 pro... 87 4e-17
AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens ... 87 4e-17
AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41... 87 4e-17
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 40 0.011
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 40 0.011
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 40 0.011
BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide nucl... 38 0.025
AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease p... 38 0.025
AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide phosphor... 38 0.025
AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein. 38 0.025
AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens ... 36 0.10
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 31 2.9
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 31 2.9
>BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6
protein.
Length = 272
Score = 88.2 bits (209), Expect = 2e-17
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Frame = +2
Query: 164 LYXENGKRKDG-RELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPH---- 328
LY + + G R+ R ++AR ++SQAKGSAY+E TKV+C+V PR+
Sbjct: 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERG 78
Query: 329 --------QNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRH 484
+ G+L C+ + APF+ R+R P EE+ L++AL++ALEPAV
Sbjct: 79 GGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAP-PGGCEERELALALQEALEPAVRLG 137
Query: 485 FFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI---GNKMFI 655
+P Q++V +LE GS V M+D++ C +++ +
Sbjct: 138 RYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLL 197
Query: 656 DPTEIXE 676
DPT + E
Sbjct: 198 DPTRLEE 204
>BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4
protein.
Length = 245
Score = 87.4 bits (207), Expect = 4e-17
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQNE 337
L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65
Query: 338 FRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVL 514
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 66 LPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 124
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ +L+ DG +PM D + +CS + D + + E
Sbjct: 125 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens
cDNA FLJ20591 fis, clone KAT09018. ).
Length = 245
Score = 87.4 bits (207), Expect = 4e-17
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQNE 337
L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65
Query: 338 FRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVL 514
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 66 LPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 124
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ +L+ DG +PM D + +CS + D + + E
Sbjct: 125 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41
protein.
Length = 245
Score = 87.4 bits (207), Expect = 4e-17
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Frame = +2
Query: 164 LYXENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQNE 337
L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65
Query: 338 FRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVL 514
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 66 LPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 124
Query: 515 IYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVIGNKMFIDPTEIXE 676
+ +L+ DG +PM D + +CS + D + + E
Sbjct: 125 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 39.5 bits (88), Expect = 0.011
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
V P C + R P E + S + +E
Sbjct: 82 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 39.5 bits (88), Expect = 0.011
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
V P C + R P E + S + +E
Sbjct: 82 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 39.5 bits (88), Expect = 0.011
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 364
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 21 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 79
Query: 365 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 466
V P C + R P E + S + +E
Sbjct: 80 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 112
>BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide
nucleotidyltransferase 1 protein.
Length = 783
Score = 38.3 bits (85), Expect = 0.025
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 358
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 511
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+LE +GS VP+ + ++ ++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV 514
>AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease
protein.
Length = 783
Score = 38.3 bits (85), Expect = 0.025
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 358
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 511
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+LE +GS VP+ + ++ ++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV 514
>AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide
phosphorylase-like protein protein.
Length = 783
Score = 38.3 bits (85), Expect = 0.025
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 358
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 511
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+LE +GS VP+ + ++ ++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV 514
>AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein.
Length = 783
Score = 38.3 bits (85), Expect = 0.025
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 358
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 359 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 511
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 512 LIYILEHDGSCXXXXXXXXXXXXXXXXVPMFDIITSCSVAVI 637
+LE +GS VP+ + ++ ++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV 514
>AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens
cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
).
Length = 504
Score = 36.3 bits (80), Expect = 0.10
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 319
KR DGR+L R++ DM GSA + +T+V+C+V FD E
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 31.5 bits (68), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
R DGR + R + TD+VS GSA V+L T ++ V
Sbjct: 22 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGV 61
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 31.5 bits (68), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 185 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 304
R DGR + R + TD+VS GSA V+L T ++ V
Sbjct: 23 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGV 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,540,824
Number of Sequences: 237096
Number of extensions: 1471292
Number of successful extensions: 2602
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2596
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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