Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J23
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 121 6e-29
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 115 4e-27
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 29 0.60
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 25 5.6
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 5.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 9.7
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 9.7
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 121 bits (292), Expect = 6e-29
Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Frame = +3
Query: 135 GTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF 314
G+ P+GHA VAG++RYP KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++
Sbjct: 32 GSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDN 91
Query: 315 EK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 443
K +A K+P +R R + FEE+Y+SGK+ WFF LRF
Sbjct: 92 LKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 33.5 bits (73), Expect = 0.021
Identities = 11/27 (40%), Positives = 22/27 (81%)
Frame = +2
Query: 47 KIMQPGQVVLVLSGRYAGRKAXVVKSL 127
KI++PG+V L+ GR+AG+K +++++
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAI 29
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 115 bits (277), Expect = 4e-27
Identities = 50/105 (47%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Frame = +3
Query: 135 GTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF 314
G+ P+GHA VAG++RYP KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++
Sbjct: 32 GSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDN 91
Query: 315 EK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 443
K + +P++R + + FEE+Y++GK+ WFF LRF
Sbjct: 92 LKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 33.5 bits (73), Expect = 0.021
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = +2
Query: 47 KIMQPGQVVLVLSGRYAGRKAXVVKSL 127
KI++PG+V LV GR+AG+K +++++
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNV 29
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 17 RQGHLPPSLGKIMQPGQVVLVLSGRYAGRKAXVVKSL 127
R+ P L + PG V ++L+GR+ G++ V+ L
Sbjct: 40 RKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL 76
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 213 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 347
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +1
Query: 13 NASRASPSKSGQNHAAGSSRAGPKWPVRGSQGXRSQVITPXVPPTSHTGMPSSLVSTGT 189
+AS S S + S P G S ITP VPPTS + + T T
Sbjct: 97 SASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 155
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 88 PVRGSQGXRSQVITPXVPPTSHTGMPSSLVSTGT 189
P G S ITP VPPTS + + T T
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 212
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = +1
Query: 106 GXRSQVITPXVPPTSHTGM-----PSSLVSTGT 189
G + +TP VPPTS + P+S STGT
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = +1
Query: 106 GXRSQVITPXVPPTSHTGM-----PSSLVSTGT 189
G + +TP VPPTS + P+S STGT
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 16 ASRASPSKSGQNHAAGSSRAGPKWPVRGSQGXRSQVITPXVPPTSH 153
+SR S HA + PK+P RG + V P VPP+S+
Sbjct: 215 SSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASV--PPVPPSSY 258
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 47 KIMQPGQVVLVLSGRYAGRKAXVV 118
+ ++ G+VVLV G Y G+ A +V
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIV 29
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 306 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 440
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 344 VFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 243
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 195 KVHKRMGKNKIHKRSKIKPFVKVV 266
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 300 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 416
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 300 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 398
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 1 AFSVNASRASPSKSGQNHAAGSSRAGPKWPVRGSQGXRSQVITPXVPP 144
A +V+AS+ +PS ++ S+ + P PV + S V P PP
Sbjct: 1054 ATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPP 1101
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 317 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 210
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 398 PLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFI 219
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 218 LSHP 207
P
Sbjct: 806 SDLP 809
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 380
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,746
Number of Sequences: 5004
Number of extensions: 37545
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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