Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J23
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   140   5e-34
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   140   5e-34
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    31   0.72 
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon gu...    29   2.2  
U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon gu...    29   2.2  
AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr pro...    29   2.2  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   2.9  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   3.9  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   3.9  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   3.9  
Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kin...    28   5.1  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    28   5.1  
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  140 bits (340), Expect = 5e-34
 Identities = 63/105 (60%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
 Frame = +3

Query: 135 GTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF 314
           G SD+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F
Sbjct: 32  GVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAF 91

Query: 315 EK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 443
           +K   + + LK P+K++K     + +FEERYK+GKNKWFF KLRF
Sbjct: 92  DKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +2

Query: 41  LGKIMQPGQVVLVLSGRYAGRKAXVVK 121
           +GKIM+PG+VVLVL G+YAGRKA VVK
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVK 27


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  140 bits (340), Expect = 5e-34
 Identities = 63/105 (60%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
 Frame = +3

Query: 135 GTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF 314
           G SD+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F
Sbjct: 32  GVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAF 91

Query: 315 EK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 443
           +K   + + LK P+K++K     + +FEERYK+GKNKWFF KLRF
Sbjct: 92  DKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +2

Query: 41  LGKIMQPGQVVLVLSGRYAGRKAXVVK 121
           +GKIM+PG+VVLVL G+YAGRKA VVK
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVK 27


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 38  SLGKIMQPGQVVLVLSGRYAGRKAXVVKSL 127
           +L K + PG V++VL+GR+ G++   +K L
Sbjct: 66  TLRKTLTPGTVLIVLAGRHKGKRVVFLKQL 95


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 171 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           AG++R   ++   +  NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 171 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           AG++R   ++   +  NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 171 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           AG++R   ++   +  NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +1

Query: 10  VNASRASPSKSGQNHAAGSSRAGPKW-PVRGSQGXRSQVITPXVPPTSHTGMPSSLVSTG 186
           +     SP  +G   A G    GP   P    QG       P   P    G P  + + G
Sbjct: 133 IKCPAGSPGPAGAPGAPGPQ--GPNGQPGHPGQGGSQGPAGPR-GPAGDAGAPGQVGAPG 189

Query: 187 TPGKCTRGWERIKSTRGP 240
            PG+  RG +R     GP
Sbjct: 190 NPGQAGRGGQRSHGLPGP 207


>U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform a protein.
          Length = 476

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 141 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 302
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402

Query: 303 --DFS-FEKFSAKDLKDP 347
             D S F+ F  +DL  P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420


>U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform b protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 141 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 302
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402

Query: 303 --DFS-FEKFSAKDLKDP 347
             D S F+ F  +DL  P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420


>AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr
           protein kinase protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 141 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 302
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395

Query: 303 --DFS-FEKFSAKDLKDP 347
             D S F+ F  +DL  P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
 Frame = +1

Query: 31  PSKSGQNHAAGSSRAGPKWPV--------RGSQGXRSQVITPXVP-PTSHTGMPSSLVST 183
           P + G+N   GSSR GP  P          G+ G    V  P  P P+   G P      
Sbjct: 241 PGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPD 300

Query: 184 GTPG 195
           G PG
Sbjct: 301 GQPG 304


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -3

Query: 391  SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 296
            S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -3

Query: 391  SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 296
            S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -3

Query: 391  SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 296
            S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196


>Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kinase
           protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 141 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 302
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344

Query: 303 --DFS-FEKFSAKDLKDP 347
             D S F+ F  +DL  P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +1

Query: 1   AFSVNASRASPSKSGQNHAAGS-SRAGPKWPVRGSQGXRSQVITPXVPPTSHTGMPSSLV 177
           +F +      P  +G   A G+   AG   P + S G       P   PT   G P    
Sbjct: 136 SFCITCPAGPPGPAGTPGAPGAPGNAGA--PGQDSFGGGPGPAGP-TGPTGDAGAPGQPG 192

Query: 178 STGTPGKCTRGWERIKSTRGP 240
             G+PG   RG +R +   GP
Sbjct: 193 HPGSPGNPGRGGQRSRGLPGP 213


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 171 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           AG++R    V   +  N+  KR KI    +   YNHL+P   T+D+S  K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,879
Number of Sequences: 27780
Number of extensions: 212569
Number of successful extensions: 815
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)