Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J22
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    37   0.003
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    28   1.8  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   3.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   7.3  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   9.6  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 625 ERFIELQDLLHGFRNPHVMDIKMGTRTF 708
           ER+I ++DL  G + P V+D+KMGTR +
Sbjct: 713 ERYIVIEDLTSGMKRPCVLDVKMGTRQY 740


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 529 HNPERDAYEALAACPHMRGVIPRYYREL 612
           +NP+  AYEA+  C  M G   ++Y+EL
Sbjct: 651 YNPDTGAYEAVCKC--MSGFSDQFYKEL 676


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 634 IELQDLLHGFRNPHVMDIKMGTRTFLXDEVSNAHARAD 747
           I L+++L+    P VMDIK+G + +  D       R D
Sbjct: 83  IILENILYQMETPCVMDIKLGKQLWADDAPLEKRKRLD 120


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 583 GVIPRYYRELEYDGERFIELQDLLHGFRNPH--VMDIKMGTRTFLXDEVSNAH 735
           G + R  R L  + E+F +LQD L  F+N    + +++    + L +  S AH
Sbjct: 147 GFVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAH 199


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 208 KILAVAVPSK-EEDRWHTKDGTLFKRWR 288
           K++   +P+    D W T  G+LF RW+
Sbjct: 211 KLVQSGIPNNLRADIWETCSGSLFPRWK 238


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 187 GLLYAANKILAVAVPSKE 240
           GL+Y A +++AVA P KE
Sbjct: 25  GLIYGAERLIAVADPFKE 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,857
Number of Sequences: 5004
Number of extensions: 58529
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)