Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J20
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    29   1.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.3  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   4.3  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   4.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.7  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.7  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   7.6  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -1

Query: 311  KTPLRSNMTSIEEVRPSTV*ATLHISNVKISIVL---LPFRSLKLPISGPEPNWKPAYME 141
            KTPLR N    E VRPS      H + +K+   L   LPF S +  +    P  KP YM+
Sbjct: 983  KTPLRPNSQYQEIVRPSR-----HFNPLKVPASLQAQLPFNSRQKAL---RPRSKPTYMQ 1034


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 573 LLTVLWLWQETNKSSIKNKTYSDYKSNKHK 484
           L T   +WQ TN + + N   S+Y    HK
Sbjct: 115 LWTARLIWQSTNDTKLDNSPSSNYTDLNHK 144


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 573 LLTVLWLWQETNKSSIKNKTYSDYKSNKHK 484
           L T   +WQ TN + + N   S+Y    HK
Sbjct: 115 LWTARLIWQSTNDTKLDNSPSSNYTDLNHK 144


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 402 NGCNIWSRYYIGAYDWWSYYGRQSKWCIYVYCFYSRNMFY 521
           NGC+ W+ + I   D+W      SK+  + Y   S N FY
Sbjct: 270 NGCHFWTNFEIAKVDFWE-SEVYSKY--FDYLDKSGNFFY 306


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 367 FHNQALKPWPTFGFV*RNPKHLLEVI*LVLKKSDLV 260
           +  +   PW + G+V + P ++ + + L LK+SD V
Sbjct: 288 YEGELRAPWSSTGYVIKIPNNVSDEVGLELKRSDKV 323


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 273 FFNTSHITSKRCFGFLQTNPN 335
           FF ++H TS+ C  +L   PN
Sbjct: 14  FFESAHFTSQLCVAYLSRYPN 34


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 576 WLLTVLWLWQETNKSSIKNKTYSDYKSNKHKCTIWIVFHNMTTNHRPQCNTYSRYC 409
           ++  VL+L    +  S++ K +  +    H C++ I+F  +   H P+   Y + C
Sbjct: 190 FITVVLFLMTVASLPSVRRKFFEWFFVLHHTCSVLIIF--LIWLHHPRTIVYMKAC 243


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 24  YIRTVCTYLGSFSGGPYNSTCTWPC 98
           Y+  +C ++  F+G P  S   W C
Sbjct: 217 YLNELCRFIDIFAGDPPESVIRWYC 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,547,822
Number of Sequences: 5004
Number of extensions: 75924
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)