Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J19
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 72 7e-14
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 46 5e-06
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 29 0.62
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 27 2.5
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 4.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 5.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.7
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 72.1 bits (169), Expect = 7e-14
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Frame = +2
Query: 2 YTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQP 181
Y FD + R+ L ++Y E S ++FEG QLQG I+EKL SL FQ++ ++ +D+QP
Sbjct: 16 YQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQP 72
Query: 182 M-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 319
G V++ V G L DE+ Y Q F L ++YV +D+FRL
Sbjct: 73 TGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 80 EGVQL-QGAVKIMEKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYM 256
E + L G +I K+ L FQ +++ VDS +GG++I VLG + +
Sbjct: 54 ESISLCHGQQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFA 113
Query: 257 QTFVLKPLGDSFYVQHDIFRLGIHDI 334
QTF L + ++V +DIFR D+
Sbjct: 114 QTFFLAEQPNGYFVLNDIFRFLREDV 139
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.1 bits (62), Expect = 0.62
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 411 RILDIWYTLYFSCIISSKNL 470
+ILDIWY L ++C + ++NL
Sbjct: 238 QILDIWYLLGWNCYVEAQNL 257
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 572 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 483
F C +Q+L+ D V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 620 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 522
H N+F+Y+H + + FL + + D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -2
Query: 327 WMPKRKMSC*T*NESPSGFNTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 148
W + K C + SP G N+ + +YR + F++P I GW TI+
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436
Query: 147 I 145
I
Sbjct: 437 I 437
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 437 IFFLYHFVKEFMKLKGLDDYEIMIMIDLVIEQGNLK 544
I ++ H + EF KLKGLD E++ ++ V QG L+
Sbjct: 1513 IGYIIHNLGEF-KLKGLDTTEMISLVYPVQLQGRLE 1547
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 273 FNTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 166
F+ C+Y S F+ R L+ PPS I +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 320 LNGKCRAEHKMNLRVASTRRF 258
L KCR EH + L +A +++F
Sbjct: 1109 LQSKCRREHSLRLDLAFSKKF 1129
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 445 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 347
E + +M +L +LY ISN LSI+ + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,973
Number of Sequences: 5004
Number of extensions: 61113
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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