Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J19
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1376 - 26528208-26528279,26529690-26529986 72 4e-13
01_06_0963 + 33441731-33442096,33442175-33442270 49 3e-06
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 41 0.001
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 37 0.013
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 3.4
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961... 29 4.5
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 28 6.0
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 72.1 bits (169), Expect = 4e-13
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Frame = +2
Query: 2 YTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQP 181
Y FD R LV++Y + S +TFEG Q GA I KL SL F + + VD QP
Sbjct: 15 YRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQP 71
Query: 182 MF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 319
GG+L+ V G L+ D P + Q F L P G +FYVQ+D+FRL
Sbjct: 72 SGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119
>01_06_0963 + 33441731-33442096,33442175-33442270
Length = 153
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 2 YTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQP 181
Y FD RA L +Y +TS ++FEG + GA +I KL L F++ V VD QP
Sbjct: 37 YQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFEQCRHAVCTVDCQP 93
Query: 182 M--FDGGVLINVLGRLKCDEDPPHLYMQTF 265
F GG+L+ V G L+ + L F
Sbjct: 94 TPSFPGGILVFVSGNLQLAGEEHQLRFSQF 123
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 104 VKIMEKLNS-LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKP 277
V ME +N+ + I R + AVD+Q GGV + V G L +D + Q+F L P
Sbjct: 66 VTTMEAINAKIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAP 125
Query: 278 LGDSFYVQHDIFR 316
++V +DI R
Sbjct: 126 QEKGYFVLNDILR 138
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 101 AVKIMEKLNS-LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLK 274
+V ME +N + ++R + VDSQ GGV + V G L + + Q+F L
Sbjct: 57 SVTTMEAINEKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLA 116
Query: 275 PLGDSFYVQHDIFR 316
P ++V +D+FR
Sbjct: 117 PQEKGYFVLNDMFR 130
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 167 VDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFYVQHDIFR 316
VD+Q +GGV I V G + + H + Q+F L P ++V +D+ R
Sbjct: 83 VDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDMLR 133
>03_02_0581 -
9617039-9617936,9618057-9618502,9618985-9619071,
9619276-9619416,9620220-9620411,9620491-9620652,
9621116-9621199,9621329-9621706
Length = 795
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 338 KLCHGCLNGKCRAEHKMNLRVASTRRFA-CTDVEDLRHTS 222
+LCHGC G R E + +R+AS R A C D + R S
Sbjct: 102 ELCHGCAVGLMRDEDE-GVRLASVRLIALCADKLNTREGS 140
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 146 ITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQHDIFR 316
+T I TA D+Q GVLI V G L E + Q+F L P Y V +DIFR
Sbjct: 77 LTEIETA-DAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVLNDIFR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,498,651
Number of Sequences: 37544
Number of extensions: 344850
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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