Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J19
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...   101   6e-22
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    32   0.44 
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    31   1.0  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    31   1.0  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score =  101 bits (241), Expect = 6e-22
 Identities = 45/107 (42%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
 Frame = +2

Query: 14  DXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQPMFDG 193
           D  ++   L ++Y+ E S+MTFEG Q +G   I++K  +L F KI R +T +DSQP++DG
Sbjct: 26  DGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQKFTTLGFTKIQRAITVIDSQPLYDG 85

Query: 194 GVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRLGIHD 331
            + + VLG+LK DEDP + + Q F+L+P    S+++ ++IFRL +H+
Sbjct: 86  SIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIFRLDLHN 132


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
 Frame = +2

Query: 11  FDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEK----LNSLTFQKITRIVTAVDSQ 178
           +D   ++   +     + S   + G  + G +K +      + SL  Q++   VT   S 
Sbjct: 28  YDVMDRKREKIGFLYTQVSNAVWNGNPINGFMKALPSTQHDIQSLDAQRLPEGVTGDMS- 86

Query: 179 PMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 316
               GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 87  ----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 191 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 316
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 191 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 316
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,194,575
Number of Sequences: 27780
Number of extensions: 343373
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)