Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J18
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    30   0.33 
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    27   3.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   7.0  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   9.3  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +2

Query: 533 LKVFDQSIKTEDFYVIDVNSYCKANGDYLIGEFTVTQFSLQDGVKNSYHETIIPSCV 703
           L++ ++ I  ED      +S+C   GD  + E  +T +++   +   +   I P+ V
Sbjct: 165 LQIANEGINLEDAAQASGHSFCYTTGDIALLEMAITNYAMDFAISKGWCPVIPPTIV 221


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 485 KNAEDNEKKDIQNIVKLKVFDQSIKTEDFYVIDVNSYCKANGDYLIGEFTVTQFSLQDG- 661
           +N E+NEK  +++IVK +  ++   T DF++   N+  + + + ++ +    +    +G 
Sbjct: 6   ENTEENEKTHVESIVKFEDSNRGTIT-DFHIETANNEEEKDANVILNKSVKMEVEEVNGH 64

Query: 662 VKNSYHETII 691
           V +S  ET I
Sbjct: 65  VDSSSTETDI 74


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 509 KDIQNIVKLKVFDQSIKTEDFY--VIDVNSYCKANGDYLIGEFTVTQFSLQD 658
           KD+  ++K K+  + ++  + Y  +   N Y   N ++L+G +    F L+D
Sbjct: 425 KDVLPVLKPKIRKKLLRLFETYNLIFPCNQYWVFNLEFLLGIYQCKTFDLED 476


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 646 ELSHGELSD*IITISFAV*VHVNHIKIFSFYTLIKYLELHNILY 515
           ELSHGE    + T+ + V   +N   I + Y   +YL++ N L+
Sbjct: 575 ELSHGETGWDVFTLEYKVDSPIN--VIITPYCSRQYLKIFNFLW 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,168
Number of Sequences: 5004
Number of extensions: 53350
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)