Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J18
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312...    32   0.45 
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941...    31   1.4  
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    29   5.5  

>01_06_0175 +
           27229878-27230056,27231102-27231159,27231230-27231274,
           27232711-27232791,27232884-27232922
          Length = 133

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 236 PQNPFFFFMMDYRKEQAEIGIKYANTKELAEAAGPVWQNL 355
           P   FF+FM D+RK   E      + +E+ +A G  W  +
Sbjct: 52  PPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91


>04_03_0853 -
           20292734-20292968,20293056-20293144,20293239-20294111,
           20294203-20294364
          Length = 452

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +2

Query: 560 TEDFYVIDVNSYCKANGDY---LIGEFTVTQFSLQDGVKNSYHETIIPSCVPVGYMFDVK 730
           TED +V  V  Y K +G+Y     GE T  ++ L    K  +H  I P      Y +   
Sbjct: 71  TEDKHVKSVVEYGKVSGNYTASATGEHTSYRYFLYSSGK-IHHVKIGPLDPGTVYYYRCG 129

Query: 731 LGAEEFGLEMP 763
           +  +EFGL  P
Sbjct: 130 MAGDEFGLRTP 140


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 108 EILTHFRRKYKI*YCIVTCLTAELGYIYY 194
           E++T+   KY   Y  V CLT  L ++YY
Sbjct: 153 ELITNSSSKYLYVYHPVDCLTTALSFVYY 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,002
Number of Sequences: 37544
Number of extensions: 298040
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)