Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J18
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z93785-5|CAB07861.3|  321|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      29   5.0  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    29   5.0  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   5.0  
AC024776-3|AAK68466.1|  453|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +2

Query: 485 KNAEDNEKKDIQNIVKLKVFDQSIKTEDFYVIDVNSYCKANGDYLIGEFTVTQFSLQDGV 664
           KN E   +K ++ + + +         + Y +D + +C+ +G+   GEFT T F +    
Sbjct: 290 KNMEVKFEKQMEQLREDETLITKRLRSNQYFVDASGWCQLDGEIKDGEFT-TIFVITHLR 348

Query: 665 KNSYHETIIPSCVP 706
           KN Y+  +I S +P
Sbjct: 349 KNQYN-ILINSTIP 361


>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 195 NNIYNLIRQSNTLLYNTRFCIFSENVLVSHISLNHIKYTYYLTVI 61
           NNIY +I+ S   +   RFC     + + +  L HIK T+ LT+I
Sbjct: 101 NNIYMVIQYSGVFIAVNRFCALF--LPIVYKKLFHIKTTFILTMI 143


>U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical
           protein D1014.4 protein.
          Length = 202

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +2

Query: 446 IPIKVIEQQQREMKNAEDNEKKDIQNIVKLKVFDQSIKTEDFYVIDVNSYCKANGDYLIG 625
           I I+    + R +   E+N++KD +N  +++  D+++K     V  + + C    +   G
Sbjct: 28  IKIRTESLENRLLDVVEENDRKDNENSERIRQLDEALKESQKRVEQLEAACFRYKNQAKG 87

Query: 626 EF 631
           EF
Sbjct: 88  EF 89


>Z93785-5|CAB07861.3|  321|Caenorhabditis elegans Hypothetical
           protein W09D10.5 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 168 SNTLLYNTRFCIFSENVLVSHI--SLNHIKYTYYLTVIDF 55
           +N  L++ +F  F  N  + H+  SLNH  +TYYL  ++F
Sbjct: 100 NNQKLFD-KFQKFQNNYTMYHVDSSLNHFYWTYYLYAMEF 138


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 603 LMVII*SESSP*LNSVCRMVSKIATMKLLFQVVYRLDICLM*NWVLKSSAWRCPA 767
           LM +I S+++  L    R++ K  ++  L  +  R+D+ +    +   + W CPA
Sbjct: 541 LMRLIDSQTAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGWNCPA 595


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 603 LMVII*SESSP*LNSVCRMVSKIATMKLLFQVVYRLDICLM*NWVLKSSAWRCPA 767
           LM +I S+++  L    R++ K  ++  L  +  R+D+ +    +   + W CPA
Sbjct: 541 LMRLIDSQTAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGWNCPA 595


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 603 LMVII*SESSP*LNSVCRMVSKIATMKLLFQVVYRLDICLM*NWVLKSSAWRCPA 767
           LM +I S+++  L    R++ K  ++  L  +  R+D+ +    +   + W CPA
Sbjct: 541 LMRLIDSQTAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGWNCPA 595


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 458 VIEQQQREMKNAEDNEKKDIQNIV-KLKVFDQSIKTEDFYVIDVNSYCKANGD 613
           +++QQQ    NA+   KK+ +N+V +L    ++ K + F ++++ +Y K N D
Sbjct: 303 LLDQQQTSTSNAKWCSKKEAENMVHELIALTRTAKIQRFALLELENY-KTNID 354


>AC024776-3|AAK68466.1|  453|Caenorhabditis elegans Hypothetical
           protein Y41D4B.16 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 780 PASSVPGISRPNSSAPSFTSNIYPTGTQLGIIVS 679
           PA++ P  SRP +++ S TS    T T+LG+  S
Sbjct: 404 PATNPPTTSRPITASQSTTSQNVETTTKLGLTAS 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,757
Number of Sequences: 27780
Number of extensions: 293870
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)