Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J16
         (501 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.2  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -3

Query: 340 NIT*ILLYIIFSEEPSDKSSCSAAALDACICGRTYLKYL*K*SV-SRTVPYNVNPMQTNT 164
           N+T I  ++        + +C   +++ CICG  +   L   S+   T   N  P++   
Sbjct: 20  NLTKIFGFLPVCSSQKGQKTCLNLSINYCICGYIFSAILFSLSILGLTEDLNSAPIRMKN 79

Query: 163 P 161
           P
Sbjct: 80  P 80


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 147 KLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELLSEGSSEKIM*RR 326
           ++HK    +C     Y T+ +T+    + +  RP   A+  A   ELL   S   ++ R+
Sbjct: 296 QVHKQ-TAICFKAPRYHTLDITEPVKVFIQLRRPSDGATSEALPFELLPLDSEPGMLKRK 354


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,303
Number of Sequences: 336
Number of extensions: 2312
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)