Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J15
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 40 3e-04
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 39 8e-04
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 34 0.022
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 31 0.26
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.4
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|... 27 2.5
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 5.7
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb... 26 5.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.7
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +1
Query: 349 LFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEF 528
L+ ++ ALV+ S++ ++L + LG+K GD V+++ N EF
Sbjct: 6 LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEF 65
Query: 529 IVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFV 642
+V AV + + LN Y E ++ K K V
Sbjct: 66 VVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLV 103
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 39.1 bits (87), Expect = 8e-04
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 412 SKSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITY 591
S +Y ++S LA L + G+++GDVV + + + +V + V+ G S ++ Y
Sbjct: 312 SYTYRQIDESSNILAHHLVKNGIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVIDPAY 371
Query: 592 SPGEIIHILNITKPK 636
P I L++ KP+
Sbjct: 372 PPARQIIYLSVAKPR 386
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 418 SYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCG 561
SY FF + S+ + L +G+KK DVV++ + ++ L V+ G
Sbjct: 1782 SYKFFSEYSIKASYWLHSIGIKKNDVVAVFIDKSLDYYSLMLGVLRIG 1829
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 30.7 bits (66), Expect = 0.26
Identities = 22/103 (21%), Positives = 47/103 (45%)
Frame = +1
Query: 418 SYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSP 597
S+N ++ A L++LGL KGD L + +++T+ A + + T T
Sbjct: 98 SFNDIYDKALRYAGALRKLGLNKGDKFELYAPTSAFWLLTAEACLSQSMTIVTAYDTLGE 157
Query: 598 GEIIHILNITKPKFVFTSPITAQNVYDSCKDLSYVKHIITFGD 726
++H L + + ++T + + + K++ ++ II D
Sbjct: 158 EGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIYRND 200
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 460 TLQELGLKKGDVVSLSSE-NRFEFIVTSLAVIYCGGVLSTLNITYSPGEII 609
TL+ LGLK+GD++ + + N + T A ST+N S GE +
Sbjct: 836 TLRTLGLKEGDIIRVMNHVNELNGVSTKPASAITPETKSTVNQIMSGGEAL 886
>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 222
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 557 QYITAREVTINSNRFSLLRETTSPFFNPNSWRVSARLT 444
Q + +E +I+ N++ +L + +PFFNP++ +S T
Sbjct: 152 QQVIRQESSIDPNKY-ILADFCNPFFNPSTLSISIPYT 188
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 792 IFHIIMFLLH*VIVHKAWDYIKVSK 718
I + + F L+ VI H+AW +++ SK
Sbjct: 155 IDYFMAFYLNEVIYHRAWKFVRESK 179
>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 424 NFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVI 552
NF + + E+ K G ++ L ++NRFEF V + ++
Sbjct: 63 NFLTHYLITEPVEHVEIEAKLGTLIDLETQNRFEFPVMNETIL 105
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 499 SLSSENRFEFIV-TSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNVY 675
SL+ +FI+ T+ V++ ++ + + I+H+LNI F +T P N+
Sbjct: 312 SLTQFPNLDFILKTTALVLFIIFLVPSFKKLQNEESILHLLNILHSIFEYTVPEAIDNIV 371
Query: 676 DS 681
S
Sbjct: 372 QS 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,409
Number of Sequences: 5004
Number of extensions: 66537
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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