BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J15
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 63 3e-10
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 60 3e-09
07_03_1439 - 26556398-26556418,26556700-26557743 58 1e-08
01_06_1694 + 39246262-39247320,39247464-39247590,39248638-392487... 53 3e-07
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 51 1e-06
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171... 48 9e-06
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965... 48 1e-05
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 45 6e-05
07_01_1136 + 10668637-10669665,10670259-10670282 45 9e-05
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 44 1e-04
10_08_1051 - 22562840-22562971,22563474-22563576,22563701-225637... 44 2e-04
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 42 5e-04
04_04_1635 - 34943881-34945233,34945321-34945524 35 0.091
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 34 0.12
03_01_0213 + 1685862-1686059,1686194-1687732 34 0.16
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180... 33 0.37
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233... 32 0.49
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 31 0.85
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 30 2.0
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 28 7.9
02_05_1267 + 35342770-35343842,35344163-35344256,35344391-35344498 28 7.9
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 62.9 bits (146), Expect = 3e-10
Identities = 42/138 (30%), Positives = 60/138 (43%)
Frame = +1
Query: 319 IPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVV 498
IP+HL+ Y F++L + R L+ +TG SY + S A L+ LG+ KGDVV
Sbjct: 25 IPSHLTLQAYCFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVV 84
Query: 499 SLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNVYD 678
N EF T L G +T N Y+P EI + + + T + V
Sbjct: 85 MSLLRNCPEFAFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVTEACAVEKVRG 144
Query: 679 SCKDLSYVKHIITFGDFD 732
D + + GDFD
Sbjct: 145 FAADRG-IPVVAVDGDFD 161
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/112 (33%), Positives = 52/112 (46%)
Frame = +1
Query: 319 IPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVV 498
IP HL Y+F++L DRA L+ TGE+ S+ S +A L +G+ G V
Sbjct: 19 IPDHLPLHDYVFERLADRRDRACLIDGATGETLSFGDVDALSRRVAAGLSSIGVCHGSTV 78
Query: 499 SLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSP 654
L N EF V LA G V +T N ++P EI + + V T P
Sbjct: 79 MLLLPNSVEFAVAFLASSRLGAVTTTANPLHTPPEIAKQVAASGATVVVTEP 130
>07_03_1439 - 26556398-26556418,26556700-26557743
Length = 354
Score = 57.6 bits (133), Expect = 1e-08
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Frame = +1
Query: 304 PEERPIPAHLSFGQYLFDQLKKGGDRA--ALVSAETGESKSYNFFLQNSVNLALTLQELG 477
P + A LSF +Y+ + G RA A V A TG + S+ S+ +A L G
Sbjct: 23 PPQFAAAAALSFPEYILPHMLLPGRRARPAFVDASTGAALSFAGLRALSLRVARALAAAG 82
Query: 478 LKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPI 657
L++G V L S N F SLAV+ G VLS N +P E+ + KP +
Sbjct: 83 LRRGRVALLLSPNSLHFPALSLAVLSLGAVLSAANPLLTPDELARQADDAKPFLALVTGE 142
Query: 658 TAQNVYDSCKDLSYV 702
A + D+ V
Sbjct: 143 LAPKLRSIAPDVKLV 157
>01_06_1694 +
39246262-39247320,39247464-39247590,39248638-39248783,
39248898-39248965,39249055-39249157,39249616-39249741
Length = 542
Score = 52.8 bits (121), Expect = 3e-07
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 304 PEERPIPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQ-ELGL 480
PE P+ A L G R ALV A TG + SY FL +LA L LGL
Sbjct: 39 PESLPMTAAAYAFSLLSSSTLPG--RPALVDAATGIAISYPSFLAAVRSLAGGLWCSLGL 96
Query: 481 KKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPIT 660
+ GDV + + +R E V A++ G V+S N +P E H + +++P F +P
Sbjct: 97 RPGDVALVVAPSRLEVPVLDFALMSIGAVVSPANPVSTPEEYAHQVALSRPVVAFAAPEV 156
Query: 661 A 663
A
Sbjct: 157 A 157
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 51.2 bits (117), Expect = 1e-06
Identities = 35/134 (26%), Positives = 57/134 (42%)
Frame = +1
Query: 331 LSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVVSLSS 510
++ +Y F ++ + G R L+ +TGES +Y S A L+ +G+ KGDVV
Sbjct: 25 MTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLL 84
Query: 511 ENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNVYDSCKD 690
N EF + L G +T N Y+P E+ + + T + V + +
Sbjct: 85 RNCPEFAFSFLGAARLGAATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREFAAE 144
Query: 691 LSYVKHIITFGDFD 732
V + G FD
Sbjct: 145 RG-VPVVTVDGAFD 157
>08_01_0214 -
1710317-1710443,1710839-1711047,1711161-1711420,
1711442-1711534,1711745-1711872,1711958-1712151,
1712288-1712385,1712548-1712658,1712782-1712950,
1713109-1713181,1713311-1713507
Length = 552
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 451 LALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITK 630
LA L LG+++G VV++ + N E+I LAV Y GG+++ LN +S E L + +
Sbjct: 44 LAAALSNLGVRRGHVVAVVAFNSIEYIELFLAVTYIGGIIAPLNYRWSFEEASQALELVQ 103
Query: 631 PK-FVF 645
P F+F
Sbjct: 104 PTVFIF 109
>02_05_0403 -
28696043-28696153,28696245-28696347,28696443-28696510,
28696582-28696727,28698038-28699124
Length = 504
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/113 (27%), Positives = 49/113 (43%)
Frame = +1
Query: 319 IPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVV 498
IP+HL +Y F + + D L++A TG + ++ A L LG+ GD V
Sbjct: 37 IPSHLPLHEYCFARAAELPDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRV 96
Query: 499 SLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPI 657
+ +N EF V A + G V + N +P EI + K + T +
Sbjct: 97 MVLLQNCVEFAVAFFAASFLGAVTTAANPFCTPQEIHKQFKASGVKLILTQSV 149
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 45.2 bits (102), Expect = 6e-05
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +1
Query: 316 PIPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLA--LTLQELGLKKG 489
P+PA F ++ ALV A TG ++ + A L + L+KG
Sbjct: 30 PLPADPEVDVVSFLASRRHSGVVALVDAATGRRITFTELWRAVAGAASALAAHPVSLRKG 89
Query: 490 DVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTS 651
V + S N F V +LA + G VL+T N +P EI + +P FT+
Sbjct: 90 HVALILSPNSVHFPVAALAAMSLGAVLTTANPLNTPAEIAKQVADARPVLAFTT 143
>07_01_1136 + 10668637-10669665,10670259-10670282
Length = 350
Score = 44.8 bits (101), Expect = 9e-05
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 385 ALVSAETGESKSYNFFLQNSVNLALTLQE-LGLKKGDVVSLSSENRFEFIVTSLAVIYCG 561
ALV A TGE+ S+ FL LA L+ +GL+ GDV + + + V A++ G
Sbjct: 63 ALVDAATGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIG 122
Query: 562 GVLSTLNITYSPGEIIHILNITKPKFVFTSPITA 663
V+S N +P E+ +++++ F TA
Sbjct: 123 AVVSPANPALTPAEVSRLVSLSGASVAFAVSSTA 156
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 44.4 bits (100), Expect = 1e-04
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Frame = +1
Query: 304 PEERPIPAHLSFGQYLFDQLKKG------GDRAALVSAETGESKSYNFFLQNSVNLALTL 465
PEE P L+ Y F L G ALV A TG + SY F+ LA L
Sbjct: 48 PEELP----LTVAAYAFSLLSSAPPLVVAGRGPALVDAATGIAVSYPAFVARVRFLAGGL 103
Query: 466 Q-ELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFV 642
LGL+ GDV + S + + V A++ G V+S N + E H + +++P
Sbjct: 104 WCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPASTADEYAHQVRLSRPAIA 163
Query: 643 FTSPITA 663
F +P A
Sbjct: 164 FVAPEVA 170
>10_08_1051 -
22562840-22562971,22563474-22563576,22563701-22563768,
22563896-22564053,22564706-22564895,22565162-22566205
Length = 564
Score = 43.6 bits (98), Expect = 2e-04
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 316 PIPAH--LSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQE-LGLKK 486
P+P+ LS +LF L + LV A T + S F + +LA L+ L + +
Sbjct: 31 PLPSDPSLSLVPHLFSHLPLH-HHSLLVDAPTAATLSCADFRRLVSSLAAGLRRRLHIAR 89
Query: 487 GDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTS 651
G +V L N F V LAV+ G V +T+N + +P EI L T P V S
Sbjct: 90 GSLVLLLLPNSLTFPVAFLAVLATGAVATTMNPSSAPAEIAARLRDTAPSLVLAS 144
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 42.3 bits (95), Expect = 5e-04
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +1
Query: 331 LSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQE--LGLKKGDVVSL 504
L +Y F++L + R L+ TG +Y + S LA L+ LGL++G VV
Sbjct: 34 LPLHRYCFERLPEVAARPCLIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVVMS 93
Query: 505 SSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNV 672
N EF+++ A G ++T N +P EI L V T + A +
Sbjct: 94 LLRNSPEFVLSFFAASRVGAAVTTANPMSTPHEIESQLAAAGATVVITESMAADKL 149
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 34.7 bits (76), Expect = 0.091
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 469 ELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFT 648
+ G+ G VV+L+ N E ++ LAVI V + LN Y+ E L+ + + + T
Sbjct: 50 DAGVLPGHVVALAFPNTVELVIMFLAVIRARAVAAPLNPAYTQEEFEFYLSDSGARLLIT 109
Query: 649 SP 654
+P
Sbjct: 110 NP 111
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 34.3 bits (75), Expect = 0.12
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Frame = +1
Query: 316 PIPAHLSFGQYLFDQLKKGGDRA----ALVSAETGESKSYNFFLQNSV-NLALTLQE-LG 477
P P G L D L + D AL A G L+++V + A+ L G
Sbjct: 23 PAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRSAVLSTAVALSSRAG 82
Query: 478 LKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFT 648
++ GD V L + N + V AV G V +T+N Y+P EI ++ + K V T
Sbjct: 83 VRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQVSDARAKLVIT 139
>03_01_0213 + 1685862-1686059,1686194-1687732
Length = 578
Score = 33.9 bits (74), Expect = 0.16
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Frame = +1
Query: 373 GDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVI 552
GDR +++ + S + LA +L LG++ DVVS+ + N AV
Sbjct: 28 GDRTSVIYGRVRFTWSQTY--ARCRRLASSLLSLGVRNHDVVSVLAPNVPAMYEMHFAVP 85
Query: 553 YCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNVYDSCKDLS----YVKHIITF 720
G VL+T+N + IL ++ K F + D+ + ++ +V +
Sbjct: 86 MAGAVLNTINTRLDARAVAGILRHSEAKVFFVDYQYVRLASDALQIVADEGRHVPLVAVI 145
Query: 721 GDFDVIPGLMYNDL 762
D DV G+ +L
Sbjct: 146 DDIDVPTGVRLGEL 159
>05_01_0243 -
1806770-1806832,1806942-1807061,1807275-1807457,
1807554-1807693,1807768-1808010,1808664-1808781,
1808902-1808977,1809054-1809120,1809201-1809288,
1809381-1809491,1809632-1809799,1809946-1810040,
1810123-1810162,1810242-1810318,1810607-1810655,
1810756-1810812,1810959-1811048,1811160-1811223,
1812085-1812245
Length = 669
Score = 32.7 bits (71), Expect = 0.37
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +1
Query: 415 KSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYS 594
KSY + + + LQ+LG+K G + + N ++IV A + L T
Sbjct: 82 KSYREVYEEVLQVGSALQQLGVKPGSRIGIYGSNCPQWIVAMQACNGYSLICVPLYDTLG 141
Query: 595 PGEIIHILNITKPKFVFTSPITAQNVYD-SCKDLSYVKHIITF 720
G + I++ + +F + + +CK VK ++ F
Sbjct: 142 AGAVDFIIDHAEIDVIFVQDKKIKEILSANCKSAKRVKGLVAF 184
>01_06_0120 +
26622285-26622433,26623156-26623219,26623310-26623399,
26623588-26623644,26623832-26623880,26624320-26624396,
26624918-26624957,26625037-26625131,26625525-26625689,
26625777-26625887,26625971-26626058,26626715-26626781,
26626955-26627063,26627155-26627272,26628345-26628590,
26628956-26629095,26629262-26629444,26629560-26629679,
26629932-26629967
Length = 667
Score = 32.3 bits (70), Expect = 0.49
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +1
Query: 415 KSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYS 594
K+Y S + +++ GL KG + N E+I+T A G L T
Sbjct: 78 KTYKEVFDLSTKIGNSIRSRGLAKGSRCGIYGANCPEWIITMEACNAHGIYCVPLYDTLG 137
Query: 595 PGEIIHILNITKPKFVFTSPITAQNVYDSC-KDLSYVKHIITFG 723
G + IL + + FT + ++ + K ++K I++FG
Sbjct: 138 AGAVEFILCHAEVEIAFTEEKKIEQIFKTFPKSAEFLKTIVSFG 181
>04_04_1568 -
34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 463 LQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFV 642
+ LG+ +GDVVS+ N AV G VL+++N + +L + K +
Sbjct: 57 VSSLGISRGDVVSVLLPNVPAMYEMHFAVPMSGAVLNSINTRLDARTVSVLLRHSGSKLI 116
Query: 643 FTSP 654
F P
Sbjct: 117 FVDP 120
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 370 GGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVVS--LSSENRFEFIVTSL 543
GG+ +++V E G +++NF +++ + L +EL L D + L + F +V
Sbjct: 183 GGEESSVVRKEVGSQRNFNFTIRDHLQLG---KELDLFDFDAAAELLYEQLYFFSLVHFT 239
Query: 544 AVIYCGGVLSTLNITYSPGEII 609
V+YC +S Y E +
Sbjct: 240 KVVYCHFQVSGSKFYYLKNEAV 261
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 76 PIDNNVF-FDQIIVKHA**LIKLKSNEYLSRYLKLNLQNC 192
P D N+ Q++++H L+ L+S + LS KL ++NC
Sbjct: 1055 PEDGNLTTLTQVLIEHCNKLVSLRSLKNLSFLTKLEIRNC 1094
>02_05_1267 + 35342770-35343842,35344163-35344256,35344391-35344498
Length = 424
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 472 LGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTS 651
LGL++GD V + S N L V+ GGV+ + + E+ + + V +
Sbjct: 74 LGLRRGDAVLVLSPNSLLLPPIVLGVLAAGGVVVAADPGSTAEEVATVARSSGAVVVVAA 133
Query: 652 PITAQNV 672
P A+ V
Sbjct: 134 PEVAEKV 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,414,927
Number of Sequences: 37544
Number of extensions: 357093
Number of successful extensions: 754
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -