Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J11
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto... 38 0.002
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 28 1.1
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 28 1.4
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 1.9
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.5
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 2.5
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 26 4.4
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 26 5.8
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 26 5.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 7.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.6
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 7.6
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 7.6
>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 37.5 bits (83), Expect = 0.002
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Frame = +1
Query: 175 ITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDKKNNF---VCDIED 345
IT +A ERR + + KTKL + G KL + V E+
Sbjct: 4 ITLFIKSSSANAERRINPQWTVSQLKTKLVPIVGTPEQYQKLTYEPASSTVPGHVFTSEE 63
Query: 346 DEKLLGSYPIDDGMRIHVIDKFS--LVNDFATSDSAERFRLSEEDYEKKGDTLRSFLQRN 519
+ LG + + I V D L DF +++ + E YE + D++ ++ +RN
Sbjct: 64 ENLDLGEFKLQPLGTIVVEDTRPPHLRLDFDDLSQVDKYVMPREQYENRTDSVYAWKKRN 123
Query: 520 RLGKYN 537
+LG++N
Sbjct: 124 QLGRFN 129
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 464 DNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSISHTKLFFLSYNFNFIVV 285
D R+L L + +S + +LIP SI ++++ S N +F
Sbjct: 104 DTRSLVKLCKHVESSLASGSDVRSLLIPGSIDQSVLKVAATNNKDDSSAVKSANVSFPSS 163
Query: 284 GDPPVSSSNF 255
PP S SNF
Sbjct: 164 STPPSSDSNF 173
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 250 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIE 342
KT LELL G P + ++LYD+ NN + +++
Sbjct: 1021 KTALELLDEG-PDSKDIRLYDQFNNLMKEVD 1050
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -3
Query: 512 CRKDLRVSPFFS*SSSDNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSIS 333
CR+ L + + SSS+N S S+ ++L E S C L SI E S S +
Sbjct: 328 CRRFLSANQRINYSSSENNPFSFTSQDVEALKDELSSNLCDLYLWSIDLEQISPSDCLLD 387
Query: 332 HTKLF 318
+ LF
Sbjct: 388 NYSLF 392
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 284 GDPPVSSSNFVLNSRILIPFLN-LRSIGAASSLSDFVMCT 168
G+P SS+ ++N+R + PFL+ +G ASS D + T
Sbjct: 21 GNPEPPSSSILINTRPVNPFLSTFVYVGKASSSEDVSIST 60
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 EFKTKLELLTGGSPTTMKLKLYDKKNNFVC-DIEDDEKL 357
E TKL L TGG P + + D KN ++ I D KL
Sbjct: 253 ESYTKLILATGGEPNKLPIPGLDSKNVYLLRSIADASKL 291
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 328 VCDIEDDEKLLGSYPIDDGMRIHVIDKFSLVNDFATSDSAERFRLSEEDYEKKGDTLRSF 507
+ D +++ +LL DD + V D F V+ D E+ SEE EK+ D LRS
Sbjct: 41 IVDAKNECELLDEDDGDDIPALKVGDAFFQVSLPVLLDQLEQ---SEESLEKQVDVLRSS 97
Query: 508 LQRN 519
++++
Sbjct: 98 MEKD 101
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 470 SSDNRNLSALSEVAKSLTRENLSMTCILIPSS 375
S DN++ S+ VA S T E++S TC SS
Sbjct: 219 SFDNKSHSSTCAVATSGTGEHISNTCFACRSS 250
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 250 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIED-DEKLL 360
K K E + G P T L L+DK F +ED DE+ L
Sbjct: 238 KDKAEAESKGLPYTPPLSLHDKAREFFKRMEDGDEESL 275
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/45 (26%), Positives = 29/45 (64%)
Frame = -3
Query: 467 SDNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSIS 333
S+N++ ALS + + ++R + ++ +LIP+ I +F++ ++S
Sbjct: 2035 SENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALS 2079
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = -3
Query: 470 SSDNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSISHTKLFFLSYNFNFI 291
S + +LS+ + S S T PS +FSS++ + T +LS + + +
Sbjct: 158 SISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLS-SSSVV 216
Query: 290 VVGDPPVSSSNFVLNSRIL----IPFLNLRSIGAASSLS 186
P SSS+ L S L IP + S +SSLS
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLS 255
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 440 SEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSISH 330
+E+ + N ++ + P+S+ Y P+ FS+S + H
Sbjct: 4 NEIENFIYLNNTLLSEVPEPNSVFYTPKCFSNSKLPH 40
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 353 FSSSSISHTKLFFLSYNFNFIVVGDPPVSSSNFVLNSRILIPFLNLRSIGAASSLSD 183
F S S++ + + F +PP SSS F+L + L P NL S A+ L +
Sbjct: 243 FISKSLALSYSIKTGFKFQIWKAHNPP-SSSKFILEQKGLPPESNLSSELVAAKLKN 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,368
Number of Sequences: 5004
Number of extensions: 44880
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -