Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J11
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1157 + 10954619-10954835,10956078-10957114 31 0.85
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 31 1.1
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 30 2.0
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 30 2.0
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 30 2.0
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 30 2.0
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 29 2.6
>07_01_1157 + 10954619-10954835,10956078-10957114
Length = 417
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -3
Query: 518 LRCRKDLRVSPFFS*SSSDNRNLSALSEVAKSLTRENLSMTCILIPSS 375
L C L +SPF S+ N N+SA SL + ++S+ ILI SS
Sbjct: 88 LSCHSFLYISPFIVSISNKNSNISAKIISINSLKKFSISLGFILIVSS 135
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/110 (25%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Frame = +1
Query: 100 LLRALKL*IKMADVLVITQDYVNVHITKSDNEDAA------PIERRFKKGINILEFKTKL 261
LL+ +++ K D++ I D ++ +T+ ++E A P+E K + L+ K ++
Sbjct: 678 LLKEVRVHSKCYDIIEINDDE-SIEVTRKEDEAIAMHVNSDPMETT-KCTLQELDAKREV 735
Query: 262 ELLTG----GSPTTMKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHV 399
++TG GSP +++++ K + + DI DDE + + D+ + +HV
Sbjct: 736 -VITGNSEQGSPVLKEVRVHSKCYDII-DINDDESIEVTRKEDEAIAMHV 783
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +1
Query: 250 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSLVNDF 429
K KL+L GSP+T D+ N + DEK G ++ + N
Sbjct: 38 KRKLDLRRSGSPSTKNYSSADETNALQRKRKLDEKRTGFQMSNNESSADTGNPLQSSNFT 97
Query: 430 ATSDSAERFRLSEEDYEKKGDTLRS 504
A +S E RLS + ++K D RS
Sbjct: 98 AEVNSTELARLSRLNRKRKLDLRRS 122
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +1
Query: 250 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSLVNDF 429
K KL+L GSP+T D+ N + DEK G ++ + N
Sbjct: 38 KRKLDLRRSGSPSTKNYSSADETNALQRKRKLDEKRTGFQMSNNESSADTGNPLQSSNFT 97
Query: 430 ATSDSAERFRLSEEDYEKKGDTLRS 504
A +S E RLS + ++K D RS
Sbjct: 98 AEVNSTELARLSRLNRKRKLDLRRS 122
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/73 (26%), Positives = 39/73 (53%)
Frame = +1
Query: 208 IERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGM 387
I F K +N+ F + L G P L +++ + + D+ + +L GS+P+D G+
Sbjct: 196 IPETFGKILNLTYFSVQNNQLEGHVP----LSIFNISSIRILDLGFN-RLSGSHPLDIGI 250
Query: 388 RIHVIDKFSLVND 426
++ I +F+ +N+
Sbjct: 251 KLPRISRFNTINN 263
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +1
Query: 250 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSLVNDF 429
K KL+L GSP+T D+ N + DEK G ++ + N
Sbjct: 38 KRKLDLRRSGSPSTKNYSSADETNALQRKRKLDEKRTGFQMSNNESSADTGNPLQSSNFT 97
Query: 430 ATSDSAERFRLSEEDYEKKGDTLRS 504
A +S E RLS + ++K D RS
Sbjct: 98 AEVNSTELARLSRLNRKRKLDLRRS 122
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +1
Query: 250 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSLVNDF 429
K KL+L GSP+T D+ N + DEK G ++ + N
Sbjct: 38 KRKLDLRRSGSPSTKNYSSADETNVLQRKRKLDEKRTGFQMSNNESSADTGNPLQSSNFT 97
Query: 430 ATSDSAERFRLSEEDYEKKGDTLRS 504
A +S E RLS + ++K D RS
Sbjct: 98 AEVNSTELARLSRLNRKRKLDLRRS 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,615
Number of Sequences: 37544
Number of extensions: 243717
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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