Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J11
(679 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007424-1|AAP36092.1| 244|Homo sapiens cytoskeleton-associated... 129 1e-29
BC052812-1|AAH52812.1| 244|Homo sapiens tubulin folding cofacto... 129 1e-29
BC005969-1|AAH05969.1| 244|Homo sapiens tubulin folding cofacto... 129 1e-29
AF013488-1|AAB67716.1| 244|Homo sapiens tubulin folding cofacto... 128 1e-29
D49738-1|BAA08572.1| 193|Homo sapiens cytoskeleton associated p... 102 1e-21
CR541971-1|CAG46769.1| 193|Homo sapiens CKAP1 protein. 102 1e-21
AD001527-3|AAB51182.1| 201|Homo sapiens hypothetical 28.2Da pro... 93 1e-18
AY357942-1|AAQ57272.1| 288|Homo sapiens T cell receptor delta-c... 30 6.6
>BT007424-1|AAP36092.1| 244|Homo sapiens cytoskeleton-associated
protein 1 protein.
Length = 244
Score = 129 bits (311), Expect = 1e-29
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Frame = +1
Query: 136 DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 315
+V ++ V V I+ S N + E+R+ + + I EFK KLELL G + M+L+LY
Sbjct: 2 EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59
Query: 316 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 492
+ F ++ ++ LLGSYP+DDG RIHVID + + ++ E++ +S+E Y+++ D
Sbjct: 60 DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119
Query: 493 TLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGARCEVRVPQQGARRGVV 672
T+RSFL+R++LG+YN ++ VG+RCEVR Q RRG V
Sbjct: 120 TVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTV 179
Query: 673 RY 678
Y
Sbjct: 180 MY 181
>BC052812-1|AAH52812.1| 244|Homo sapiens tubulin folding cofactor B
protein.
Length = 244
Score = 129 bits (311), Expect = 1e-29
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Frame = +1
Query: 136 DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 315
+V ++ V V I+ S N + E+R+ + + I EFK KLELL G + M+L+LY
Sbjct: 2 EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59
Query: 316 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 492
+ F ++ ++ LLGSYP+DDG RIHVID + + ++ E++ +S+E Y+++ D
Sbjct: 60 DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119
Query: 493 TLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGARCEVRVPQQGARRGVV 672
T+RSFL+R++LG+YN ++ VG+RCEVR Q RRG V
Sbjct: 120 TVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTV 179
Query: 673 RY 678
Y
Sbjct: 180 MY 181
>BC005969-1|AAH05969.1| 244|Homo sapiens tubulin folding cofactor B
protein.
Length = 244
Score = 129 bits (311), Expect = 1e-29
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Frame = +1
Query: 136 DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 315
+V ++ V V I+ S N + E+R+ + + I EFK KLELL G + M+L+LY
Sbjct: 2 EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59
Query: 316 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 492
+ F ++ ++ LLGSYP+DDG RIHVID + + ++ E++ +S+E Y+++ D
Sbjct: 60 DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119
Query: 493 TLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGARCEVRVPQQGARRGVV 672
T+RSFL+R++LG+YN ++ VG+RCEVR Q RRG V
Sbjct: 120 TVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTV 179
Query: 673 RY 678
Y
Sbjct: 180 MY 181
>AF013488-1|AAB67716.1| 244|Homo sapiens tubulin folding cofactor B
protein.
Length = 244
Score = 128 bits (310), Expect = 1e-29
Identities = 66/182 (36%), Positives = 102/182 (56%), Gaps = 1/182 (0%)
Frame = +1
Query: 136 DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 315
+V ++ V V I+ S N + E+R+ + + I EFK KLELL G + M+L+LY
Sbjct: 2 EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59
Query: 316 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 492
+ F ++ ++ LLGSYP+DDG RIHVID + + ++ E++ +S+E Y+++ D
Sbjct: 60 DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119
Query: 493 TLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGARCEVRVPQQGARRGVV 672
T+RSFL+R +LG+YN ++ VG+RCEVR Q RRG V
Sbjct: 120 TVRSFLKRRKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTV 179
Query: 673 RY 678
Y
Sbjct: 180 MY 181
>D49738-1|BAA08572.1| 193|Homo sapiens cytoskeleton associated
protein protein.
Length = 193
Score = 102 bits (245), Expect = 1e-21
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +1
Query: 292 MKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSL-VNDFATSDSAERFRLSE 468
M+L+LY + F ++ ++ LLGSYP+DDG RIHVID + ++ E++ +S+
Sbjct: 1 MELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQ 60
Query: 469 EDYEKKGDTLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGARCEVRVPQ 648
E Y+++ DT+RSFL+R++LG+YN ++ VG+RCEVR
Sbjct: 61 EAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAG 120
Query: 649 QGARRGVVRY 678
Q RRG V Y
Sbjct: 121 QSPRRGTVMY 130
>CR541971-1|CAG46769.1| 193|Homo sapiens CKAP1 protein.
Length = 193
Score = 102 bits (245), Expect = 1e-21
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +1
Query: 292 MKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSL-VNDFATSDSAERFRLSE 468
M+L+LY + F ++ ++ LLGSYP+DDG RIHVID + ++ E++ +S+
Sbjct: 1 MELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQ 60
Query: 469 EDYEKKGDTLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGARCEVRVPQ 648
E Y+++ DT+RSFL+R++LG+YN ++ VG+RCEVR
Sbjct: 61 EAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAG 120
Query: 649 QGARRGVVRY 678
Q RRG V Y
Sbjct: 121 QSPRRGTVMY 130
>AD001527-3|AAB51182.1| 201|Homo sapiens hypothetical 28.2Da
protein from human chromosome 19 protein.
Length = 201
Score = 92.7 bits (220), Expect = 1e-18
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Frame = +1
Query: 292 MKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVIDKFSL-VNDFATSDSAERFRLSE 468
M+L+LY + F ++ ++ LLGSYP+DDG RIHVID + ++ E++ +S+
Sbjct: 1 MELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQ 60
Query: 469 EDYEKKG--------DTLRSFLQRNRLGKYNXXXXXXXXXXXXXXXXXXXXXXXAVLVGA 624
E Y+++ DT+RSFL+R++LG+YN ++ VG+
Sbjct: 61 EAYDQRQGTGRWASRDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGS 120
Query: 625 RCEVRVPQQGARRGVVRY 678
RCEVR Q RRG V Y
Sbjct: 121 RCEVRAAGQSPRRGTVMY 138
>AY357942-1|AAQ57272.1| 288|Homo sapiens T cell receptor
delta-chain protein.
Length = 288
Score = 30.3 bits (65), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 238 ILEFKTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGS 366
I EF + + GG +KL Y+ N+ C ++ D K + S
Sbjct: 175 ITEFDPAIVISPGGKYNAVKLGKYEDSNSVTCSVQHDNKTVHS 217
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,202,081
Number of Sequences: 237096
Number of extensions: 1343520
Number of successful extensions: 5917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5910
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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